Rattus norvegicus (rat): 84352
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Entry
84352 CDS
T01003
Symbol
Col1a2
Name
(RefSeq) collagen alpha-2(I) chain precursor
KO
K06236
collagen type I alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04151
PI3K-Akt signaling pathway
rno04510
Focal adhesion
rno04512
ECM-receptor interaction
rno04518
Integrin signaling
rno04611
Platelet activation
rno04820
Cytoskeleton in muscle cells
rno04926
Relaxin signaling pathway
rno04933
AGE-RAGE signaling pathway in diabetic complications
rno04974
Protein digestion and absorption
rno05146
Amoebiasis
rno05165
Human papillomavirus infection
rno05205
Proteoglycans in cancer
rno05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
84352 (Col1a2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
84352 (Col1a2)
04518 Integrin signaling
84352 (Col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
84352 (Col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
84352 (Col1a2)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
84352 (Col1a2)
09152 Endocrine system
04926 Relaxin signaling pathway
84352 (Col1a2)
09154 Digestive system
04974 Protein digestion and absorption
84352 (Col1a2)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
84352 (Col1a2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
84352 (Col1a2)
09174 Infectious disease: parasitic
05146 Amoebiasis
84352 (Col1a2)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
84352 (Col1a2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
84352 (Col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rno00536
]
84352 (Col1a2)
Glycosaminoglycan binding proteins [BR:
rno00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
84352 (Col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
84352
NCBI-ProteinID:
NP_445808
RGD:
621351
Ensembl:
ENSRNOG00000011292
UniProt:
P02466
F1LS40
Structure
PDB
PDBj
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All DBs
Position
4:33518557..33553484
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AA seq
1372 aa
AA seq
DB search
MLSFVDTRTLLLLAVTSCLATCQSLQMGSVRKGPTGDRGPRGQRGPAGPRGRDGVDGPVG
PPGPPGAPGPPGPPGPPGLTGNFAAQYSDKGVSAGPGPMGLMGPRGPPGAVGAPGPQGFQ
GPAGEPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLP
GFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENGTPGQAGARGLPGERGRVGAPGPAGAR
GSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEAGLPGLSGPV
GPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRGIPGPVGAAGATGPRGLVGEPGPAGSK
GETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRA
GVMGPPGNRGSTGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPAGKEGPVGLPGID
GRPGPIGPAGPRGEAGNIGFPGPKGPSGDPGKPGEKGHPGLAGARGAPGPDGNNGAQGPP
GPQGVQGGKGEQGPAGPPGFQGLPGPSGTAGEVGKPGERGLPGEFGLPGPAGPRGERGPP
GESGAAGPSGPIGSRGPSGAPGPDGNKGEAGAVGAPGSAGASGPGGLPGERGAAGIPGGK
GEKGETGLRGEIGNPGRDGARGAPGAIGAPGPAGASGDRGEAGAAGPSGPAGPRGSPGER
GEVGPAGPNGFAGPAGSAGQPGAKGEKGTKGPKGENGIVGPTGPVGAAGPSGPNGPPGPA
GSRGDGGPPGMTGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGIRGPRGDQGPVGRTGEI
GASGPPGFAGEKGPSGEPGTTGPPGTAGPQGLLGAPGILGLPGSRGERGLPGIAGALGEP
GPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGERGYPGNI
GPTGAAGAPGPHGSVGPAGKHGNRGEPGPAGSVGPVGAVGPRGPSGPQGIRGDKGEPGDK
GARGLPGLKGHNGLQGLPGLAGLHGDQGAPGPVGPAGPRGPAGPSGPIGKDGRSGHPGPV
GPAGVRGSQGSQGPAGPPGPPGPPGPPGVSGGGYDFGFEGDFYRADQPRSQPSLRPKDYE
VDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWKSDYYWIDPNQGCTMDAIKVY
CDFSTGETCIQAQPVNTPAKNAYSRAQANKHVWLGETINGGSQFEYNAEGVSSKEMATQL
AFMRLLANRASQNITYHCKNSIAYLDEETGRLNKAVILQGSNDVELVAEGNSRFTYTVLV
DGCSKKTNEWDKTIIEYKTNKPSRLPFLDIAPLDIGGTNQEFRVEVGPVCFK
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacgcgaactctgttgctgcttgcagtaacgtcgtgcctagca
acatgccaatctttacaaatgggatctgtacggaagggccccactggagacagaggaccg
cgtggacaaaggggcccagcaggtccccgaggcagagatggtgttgatggtcccgttggc
cctcctggtccccctggtgcccctggcccccctggtccccctggcccccctggtcttact
gggaactttgctgctcagtattctgacaaaggagtttcagctggccccggaccaatgggc
ttaatgggacccagaggccctcctggtgctgtcggagcccctggccctcaaggtttccaa
ggacctgctggtgagcctggtgagcccggacaaacgggtcctgcaggttcccgtgggcca
gctggccctcctggcaaggccggtgaagatggtcaccctggaaaacctggaagacctggc
gagagaggagtcgttgggccacagggtgctcgtggtttccctgggactcctggacttcct
ggcttcaaaggcattcgaggacacaacggtctggatggattgaaaggacagcctggtgcc
cagggtgtgaagggtgaacccggtgcccctggagagaatggaaccccaggtcaagcagga
gcccgagggcttcctggtgagagagggcgtgtcggagctcctggtccagctggtgcccgt
ggcagtgatggcagtgttggccccgtcggccctgctggtcccattgggtctgctggtcct
cctggtttcccaggtgctcctggtcccaagggtgaacttgggcctgttggtaaccctggc
cctgctggtcctgctggtccccgtggtgaagcgggtcttccgggtctttctggccccgtt
ggacctcctggcaaccctggagcaaatggcctcactggtgccaagggagccactggactc
cctggtgttgctggggctcctggtctccccggtccccgtggtattcctggccccgttggt
gctgctggtgctactggtcccagaggacttgttggtgaacctggtcctgctggctccaaa
ggagagactggtaacaagggtgagcctggctctgctggagcccaaggtcctcctggtccc
agcggtgaagaaggaaagagagggtcccctggagaacctggatctgctggtcctgcaggg
cctccagggctgagaggcagccctggttctcgaggtcttcctggagctgatggcagagct
ggtgtgatgggccctcctggcaatcgtggttcaactggccctgctggagtccgaggtcct
aatggagatgccggtcgccctggagaacctggtctcatgggacccagaggtcttcccggg
tctcctggaaatgttggcccagctggtaaagaaggccctgtgggtctccctggcatcgat
ggcagacctggcccaattggcccagctggaccaagaggtgaagctggcaacatcggattc
cctggacccaaaggcccctctggtgatcctggcaaacctggtgagaaaggccatcccggt
ctcgctggtgctcggggagctccaggtcccgacggcaacaatggtgctcagggccctcct
ggacctcagggtgttcaaggtggcaaaggtgaacagggccctgctggtcctccaggcttc
cagggtctcccgggtccctcaggtaccgctggagaagttggcaagccaggagaaaggggt
cttcccggtgaattcggtctccctggtcctgctggtccaagaggagaacgtggtccccca
ggtgagagtggagctgctggtccttctggtcctattggaagccgaggtccctctggagcc
ccagggcctgatgggaacaagggtgaagctggtgcagtcggtgctccaggctctgctggt
gcctctggtcctggtgggcttccaggagagaggggtgctgctggcatacctggaggcaaa
ggagaaaagggtgaaactggtctcagaggtgaaatcggcaaccctggtagagatggtgct
cgaggtgctcctggtgctataggtgcccctggtcccgctggagcctcaggtgaccggggc
gaagctggtgctgctggtccttctggccctgctggtcctcgaggtagccctggtgaacgt
ggtgaggttggtcctgctggccccaatggatttgctggtcctgctggttctgctggccaa
cctggtgctaaaggagaaaagggaaccaaagggcctaagggagaaaatggcatcgttggt
ccaaccggacctgtcggagctgctggcccatctggtcctaatggcccacctggccctgct
ggaagtcgtggtgatggagggccccctggtatgactggcttccctggtgctgctggacgg
actggtccccccggacccagtggtattactggcccccctggtccccctggtgctgctggt
aaagaaggtattcgtggtccccgtggtgaccaaggtccagttggccgaactggagaaata
ggtgcatctggtccccctggatttgctggcgagaagggtccttctggagaacctggtacc
acaggaccccctggcactgcaggtcctcagggtcttcttggtgctcccggtattctgggt
ctccctggctctcgaggtgaacgtggcctgccaggtattgctggtgctctgggtgaacct
ggtcctctgggcattgcaggccctcctggggcccgtggtccccctggtgctgtgggcagt
cctggagttaatggtgcccctggtgaagccggtcgtgatggtaaccctggcagtgatggt
cccccaggtcgtgatggtcaacccggacacaagggagagcgtggttaccctggcaacatt
ggtcccactggtgctgcaggtgctcctggtcctcatggttctgtgggtcctgctgggaaa
catggaaaccgtggtgagcctggtcctgctggttctgttggtcccgttggtgctgtcggt
ccaagaggtcctagtggtcctcaaggtattcgaggtgacaagggagagcctggtgacaaa
ggggccagaggtcttcctggcttaaaaggacacaatggattacagggtcttcctggtctt
gctgggctgcatggtgaccaaggagctcctggtcccgtgggtcctgctggtcccaggggt
cctgctggtccttctggccccattggcaaagatggtagatctggacatcctggaccagtc
ggtcctgctggcgttcgtggctctcagggtagccaaggtcccgctggtccccctggtccc
cctgggcctcctgggcctcctggtgtcagcggaggaggctatgactttggtttcgaagga
gacttctacagggctgaccagcctcgctcacagccttcactcagacccaaggactatgaa
gttgatgcaactctgaaatctctcaataaccaaatcgagacccttctcactcctgaaggc
tctagaaagaaccctgcccgcacatgccgtgacttaagactcagccacccagagtggaag
agcgattactactggattgaccctaaccaaggatgcactatggatgccatcaaagtgtac
tgcgatttctctactggtgaaacctgcatccaggcccaacctgtcaacaccccagccaag
aatgcatacagccgtgcccaggccaacaagcatgtctggttaggagagaccatcaatggt
ggcagccagtttgaatacaacgcagaaggggtgtcctccaaggaaatggcaactcagctc
gccttcatgcgcctgctagccaaccgtgcttctcagaacatcacctaccactgcaagaac
agcattgcgtacctggacgaggagacaggccgcctgaataaggctgtcattctgcagggc
tccaacgacgtcgaacttgttgctgagggcaacagcagattcacctacactgtccttgtc
gatggctgctccaaaaagacaaatgaatgggacaagacaatcattgaatacaaaacgaat
aagccatctcgcctgccattccttgacattgcacctctggacatcggtggtactaaccaa
gaattccgtgtggaggttggccctgtctgtttcaaataa
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