Rattus norvegicus (rat): 84474
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Entry
84474 CDS
T01003
Symbol
Ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rno03041
]
84474 (Ddx1)
03016 Transfer RNA biogenesis [BR:
rno03016
]
84474 (Ddx1)
Enzymes [BR:
rno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
84474 (Ddx1)
Spliceosome [BR:
rno03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
84474 (Ddx1)
Transfer RNA biogenesis [BR:
rno03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
84474 (Ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Paramyxo_PNT
Motif
Other DBs
NCBI-GeneID:
84474
NCBI-ProteinID:
NP_445866
RGD:
619903
Ensembl:
ENSRNOG00000006652
UniProt:
Q641Y8
A6HAQ9
LinkDB
All DBs
Position
6:complement(41725365..41756236)
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKATIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGLLRGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVALSKAPDSYVVKSQHTGNAQVSQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctccgaaatgggtgttatgcccgagattgcacaagccgtggaggagatg
gattggcttctacccactgatatccaggcagaatctatcccattgatcctaggaggaggt
gatgtacttatggctgcagaaacgggaagtggaaaaactggtgcatttagtattccagtt
atccagatagtgtatgagactctgaaagaccaacaggaaggaaagaaagggaaagcaact
attaaaactggtgcttctgtgctcaacaagtggcagatgaacccatatgatagagggtct
gcttttgcaattgggtcagatggtctgtgttgtcagagcagagaggtgaaggagtggcat
gggtgcagagcgactagaggactgctgagagggaagcactactacgaagtatcctgtcat
gaccaagggctgtgcagagttgggtggtccaccatgcaggcttccttagacctgggtact
gacaagtttggatttggcttcggtggaacaggaaagaaatctcataataaacaatttgat
aattatggagaggaattcactatgcatgacaccattggatgttacttagacatcgataaa
gggcacgtgaagttctctaagaatggaaaagaccttggtctggcatttgaaatacctgca
cacataaaaaaccaagccctcttccctgcctgtgttttgaagaatgctgaattgaaattt
aactttggtgaagaagaatttaagtttccaccaaaagatggttttgttgctctttccaag
gcccctgatagttacgtcgtcaaatcgcagcacacaggtaatgcacaggtgtcacaaaca
aaatttctccctaatgctccaaaagctcttattgtggaaccctccagagagttagctgag
caaaccttgaacaatgtgaaacagtttaagaagtacatcgataatcctaaattgcgggag
cttctcataattggtggcgttgcagctcgggatcagctctccgttctggataatggggtt
gatattgtcgtcggtactccaggaagattagatgatttggtgtcaactggaaagctcaac
ttgtctcaagttagattcctggtcctggatgaagcagatgggcttctctctcaaggttat
tctgactttattaacaggatgcacaaccagattcctcagattacttctgatgggaaaaga
cttcaggtgattgtttgctctgctactctgcattcttttgatgtaaagaaactatctgag
aagataatgcattttcccacgtgggtggatttgaaaggagaagattctgttcctgatact
gtgcatcatgtcgttgttcctgtgaacccaaaaactgacaggctctgggaaaggctgggg
aagaaccacattcgaaccgatgatgtccatgcaaaggataacacaagacctggtgccaac
agtccagagatgtggtctgaagctattaaaatactgaagggggagtatgctgtccgagca
atcaaggagcacaagatggatcaagcaattatcttctgtagaacgaaaattgactgtgac
aacttggagcagtactttatgcagcaaggaggaggacctgataaaaaaggacaccaattc
tcatgtgtatgtcttcatggtgacagaaagcctcacgagagaaagcagaacttggaacga
tttaagaaaggagacgtaagattcctgatttgcacagacgtagctgccagaggaattgac
atccacggtgttccttatgttattaatgtcaccctgcctgatgaaaagcagaattatgtg
caccggattggcagagtggggcgagctgaaaggatgggcctggctatttccctggtggca
acagagaaagaaaaggtttggtatcacgtatgcagcaaccgtgggaagggatgctataac
actagactcaaggaagatggcggctgtactatctggtacaatgaaatgcagctactttct
gagatagaagaacacctgaactgtaccatttcccaggttgagccagatataaaggttcca
gtggatgagtttgatgggaaagttacatatggtcagaaaagagctgctggcggtgggaac
tataaaggccatgtggacatcctggcacctaccgttcaagagttggctgcccttgaaaag
gaagcacagacatctttcctacaccttggctaccttcccaaccagctgttcagaaccttc
tga
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