Rattus norvegicus (rat): 84494
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Entry
84494 CDS
T01003
Symbol
Trpc4
Name
(RefSeq) short transient receptor potential channel 4 isoform beta
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04360
Axon guidance
rno04929
GnRH secretion
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
84494 (Trpc4)
09158 Development and regeneration
04360 Axon guidance
84494 (Trpc4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rno04040
]
84494 (Trpc4)
Ion channels [BR:
rno04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
84494 (Trpc4)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
PKD_channel
Ank_5
Motif
Other DBs
NCBI-GeneID:
84494
NCBI-ProteinID:
NP_001076584
RGD:
621276
Ensembl:
ENSRNOG00000011133
UniProt:
A6JVB2
F7F3R3
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All DBs
Position
2:140457841..140629556
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AA seq
893 aa
AA seq
DB search
MAQFYYKRNVNAPYRDRIPLRIVRAESELSPSEKAYLNAVEKGDYASVKKSLEEAEIYFK
ININCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEVRCNCVE
CVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSE
YEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLKLAIKYRQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIAPKSPLGLFIR
KPFIKFICHTASYLTFLFLLLLASQHIDRSDLNRQGPPPTIVEWMILPWVLGFIWGEIKQ
MWDGGLQDYIHDWWNLMDFVMNSLYLATISLKIVAFVKYSALNPRESWDMWHPTLVAEAL
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YEETKGLSCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVGATM
FGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFEEGGTLPTPFNVI
PSPKSLWYLVKWIWTHLCKKKMRRKPESFGTIGRRAADNLRRHHQYQEVMRNLVKRYVAA
MIREAKTEEGLTEENVKELKQDISSFRFEVLGLLRGSKLSTIQSANAASSASSADSDEKS
HSEEEITRQQAAGALERNIQLESQGLASRGDRSIPGLNEQCVLVDHRERNTDTLGLQVGK
RVCSSFKSEKVVVEDTVPIIPKEKHAQEEDSSIDYDLSPTDTVAHEDYVTTRL
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggctcagttctattacaaacgaaatgtcaacgccccctaccgagaccgcatcccactg
aggatcgtcagggcagaatctgaactctcaccatcagagaaagcctacttgaatgccgtg
gaaaagggggactatgcaagcgtcaagaaatctctggaggaagccgagatttattttaaa
atcaacattaactgcattgacccccttgggaggactgctcttctcattgccattgaaaat
gagaacctggagctgattgaactgttgttgagtttcaatgtctatgttggcgatgcgcta
cttcacgccatcaggaaagaggtggttggagccgtggagctactgctgaaccacaaaaag
cccagcggagagaagcaggtgcctcccatcctccttgacaaacagttctctgaattcacc
ccagacatcacgcctatcatcttggctgcacatacaaataattatgagataatcaaactc
ttggtccagaagggtgtctcggtgcccagaccccacgaggtccgctgtaactgtgttgag
tgtgtctccagctcagacgtggacagcctcaggcactcacggtccaggctcaacatctac
aaggctttggccagcccctcgctcattgcgctgtcaagtgaagaccctttcctcaccgcc
tttcagttaagctgggagctgcaagaactgagtaaggtggagaatgaattcaagtcggag
tatgaggagctgtctagacagtgcaaacagtttgctaaggacctcctagatcagacacgg
agttccagagagctggaaatcattcttaattaccgtgatgacaatagcctgatcgaagaa
cagagtggaaatgatcttgcgaggctaaaattagccattaagtaccgtcaaaaagagttt
gttgctcagcccaactgccagcagctgctcgcttcccgctggtacgatgagttcccaggc
tggaggagaagacactgggcggtgaagatggtgacatgtttcataataggactactcttc
cccgtcttctccgtgtgctacctgatagctcccaaaagcccacttggactgttcatcaga
aagccatttatcaagtttatctgccacacagcctcctatctgacctttttgtttctgctg
ctgctagcctctcagcacatcgacaggtcagacttgaacaggcaaggtccaccaccaacc
atcgtggagtggatgatattaccgtgggtcctgggttttatatggggagagattaaacag
atgtgggatggcggacttcaggattacatccacgactggtggaatctaatggactttgtg
atgaactccttgtatctggcgacaatctccttgaagattgtcgcatttgtaaagtacagt
gctctgaacccacgggaatcatgggacatgtggcaccccaccctggtggcagaggcttta
ttcgcaattgcaaacatcttcagttccctccgcctgatctctctgttcactgccaattct
cacctggggcctctgcagatatctctgggaagaatgctcctggacatcctaaagttctta
ttcatatactgcctcgtgctgctagcttttgcaaatggcctaaatcaactgtacttctac
tatgaagaaacgaaggggttaagctgcaaaggcatacggtgcgaaaaacagaacaacgcg
ttctccacgttatttgagactctacagtccctgttttggtcaatatttggactcatcaat
ctctatgttaccaatgtcaaagcccagcatgagttcactgaatttgttggggccaccatg
tttggcacatataacgtcatctctctggttgtcctcctgaacatgctgatcgctatgatg
aataattcttaccaactaattgccgaccacgcagatatagagtggaaatttgctcgaaca
aagctttggatgagctactttgaagaagggggtaccctgcctacacctttcaatgtcatc
ccaagccccaagtccctgtggtacctggtcaagtggatatggacgcacttatgtaagaaa
aagatgagaagaaagccagaaagctttgggacaattgggcggcgtgctgctgataacttg
agaaggcatcaccaataccaagaggtgatgaggaatctggtgaagcggtacgtggcagcc
atgatcagagaggcaaaaactgaagaaggcttgacagaggagaatgttaaggaactaaag
caagacatttctagcttccgcttcgaagttctgggattgctccggggaagcaagctctca
acaatacagtcagccaacgcagcgagttcagccagctccgcggactccgatgagaagagc
cacagcgaagaagaaattactcgtcaacaggcggcaggagcacttgagagaaatatccaa
ctggaatcccaaggattagcttcacggggtgaccgcagcattcctggtctcaatgaacag
tgtgtgctagtagaccatagagaaaggaatacggacactttgggtttacaggtaggcaag
agagtgtgctcctccttcaagtcggagaaggtggtggtggaagacaccgtccctattata
ccaaaggagaaacacgcccaggaggaggactcaagcatagattatgatttaagccccacg
gacacagttgcccatgaagattatgtgaccacgagattgtga
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