Rattus norvegicus (rat): 85238
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Entry
85238 CDS
T01003
Symbol
Synj1
Name
(RefSeq) synaptojanin-1 isoform 1
KO
K20279
synaptojanin [EC:
3.1.3.36
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno00562
Inositol phosphate metabolism
rno01100
Metabolic pathways
rno04070
Phosphatidylinositol signaling system
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00562 Inositol phosphate metabolism
85238 (Synj1)
09130 Environmental Information Processing
09132 Signal transduction
04070 Phosphatidylinositol signaling system
85238 (Synj1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
85238 (Synj1)
Enzymes [BR:
rno01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.36 phosphoinositide 5-phosphatase
85238 (Synj1)
Membrane trafficking [BR:
rno04131
]
Endocytosis
Clathrin-mediated endocytosis
Inositol 5-phosphatases
85238 (Synj1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syja_N
DUF1866
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
85238
NCBI-ProteinID:
NP_445928
RGD:
69434
Ensembl:
ENSRNOG00000002051
UniProt:
Q62910
A6JLD7
LinkDB
All DBs
Position
11:complement(43678709..43755526)
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AA seq
1332 aa
AA seq
DB search
MRKSWTCWSGSDASGGCSGGGCGRRRRRSRRKRAASEERRMAFSKGFRIYHKLDPPPFSL
IVETRHKEECLMFESGAVAVLSSAEKEAIKGTYAKVLDAYGLLGVLRLNLGDTMLHYLVL
VTGCMSVGKIQESEVFRVTSTEFISLRVDASDEDRISEVRKVLNSGNFYFAWSASGVSLD
LSLNAHRSMQEHTTDNRFFWNQSLHLHLKHYGVNCDDWLLRLMCGGVEIRTIYAAHKQAK
ACLISRLSCERAGTRFNVRGTNDDGHVANFVETEQVIYLDDCVSSFIQIRGSVPLFWEQP
GLQVGSHRVRMSRGFEANAPAFDRHFRTLKDLYGKQIVVNLLGSKEGEHMLSKAFQSHLK
ASEHASDIHMVSFDYHQMVKGGKAEKLHSVLKPQVQKFLDYGFFYFDGSAVQRCQSGTVR
TNCLDCLDRTNSVQAFLGLEMLAKQLEALGLAEKPQLVTRFQEVFRSMWSVNGDSISKIY
AGTGALEGKAKLKDGARSVTRTIQNNFFDSSKQEAIDVLLLGNTLNSDLADKARALLTTG
SLRVSEQTLQSASSKVLKNMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTD
WLLDAPKLAGIQEFQDKRSKPTDIFAIGFEEMVELNAGNIVNASTTNQKLWAVELQKTIS
RDNKYVLLASEQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHT
TSLCFVCSHFAAGQSQVKERNEDFVEIARKLSFPMGRMLFSHDYVFWCGDFNYRIDLPNE
EVKELIRQQNWDSLIAGDQLINQKNAGQIFRGFLEGKVTFAPTYKYDLFSEDYDTSEKCR
TPAWTDRVLWRRRKWPFDRSAEDLDLLNASFQDESKILYTWTPGTLLHYGRAELKTSDHR
PVVALIDIDIFEVEAEERQKIYKEVIAVQGPPDGTVLVSIKSSAQENTFFDDALIDELLQ
QFAHFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNRTITITLKSPDWIKTLEEE
MSLEKISVTLPSSTSSTLLGEDAEVSADFDMEGDVDDYSAEVEELLPQHLQPSSSSGLGT
SPSSSPRTSPCQSPTAPEYSAPSLPIRPSRAPSRTPGPLSSQGAPVDTQPAAQKESSQTI
EPKRPPPPRPVAPPARPAPPQRPPPPSGARSPAPARKEFGAPKSPGTARKDNIGRNQPSP
QAGLAGPGPSGYGAARPTIPARAGVISAPQSQARVSAGRLTPESQSKPLETSKGPAVLPE
PLKPQAAFPPQPSLPTPAQKLQDPLVPIAAPMPPSIPQSNLETPPLPPPRSRSSQSLPSD
SSPQLQQEQPTG
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgcggaagagctggacctgctggagcggaagtgacgcttcgggcggctgtagcggcggc
ggctgcgggagaaggagaaggaggagccggaggaagagggctgcctctgaagaaaggaga
atggcgttcagcaaaggatttcgaatctaccacaaattggatcccccaccgttcagcctc
atagtggaaactaggcataaggaagaatgtctcatgttcgagtctggggccgtggcagtg
ctctcatctgcagaaaaggaggccattaaaggcacatatgccaaagtgctggatgcatat
ggacttttgggagttttacgattaaatcttggtgataccatgttgcattatctggtccta
gtcactggatgcatgtctgttgggaaaattcaagaatctgaagtcttccgagttacttcc
actgagtttatatcacttcgagttgatgcttcagatgaggaccgcatttcagaagtacga
aaggttttgaactcaggaaacttttattttgcatggtctgcatctggagtcagcttagat
ctgagtctgaacgcacatcgaagcatgcaggagcacacaactgacaataggtttttctgg
aatcagtctttgcatctgcatctcaagcactatggtgtgaattgtgatgactggttgtta
cggctcatgtgtggaggagtagagattagaacaatttatgctgcccataaacaggcaaaa
gcttgcctcatttcaagactaagctgtgagcgagctgggacaaggttcaacgtccgggga
acaaatgatgacggtcatgttgccaactttgtagagacagagcaggttatatacttagat
gactgtgtctcctccttcatacaaatccgaggatctgttccgttgttctgggagcaacca
gggttgcaagtgggatctcatcgtgttcgaatgtcaaggggatttgaagccaatgcgcct
gcctttgacaggcatttccgaacccttaaggacttatatggtaaacaaatagtagtaaat
ctgcttggatctaaggagggtgagcatatgctgagcaaggccttccagagtcacttgaaa
gcctctgaacacgcttctgatatccacatggtgtcctttgattatcatcaaatggttaaa
ggaggaaaggcagaaaaattgcacagtgttctcaaaccacaagtccagaagtttctagat
tatggatttttttatttcgatggcagtgcagttcaaaggtgccagagtggtacagttcgg
acaaactgcctggactgtctggatagaacaaacagtgtgcaggcgttccttggcttagag
atgctagctaaacagctggaagctctgggcttggctgaaaagcctcagttggtgactcgc
tttcaagaagttttccggtccatgtggtctgtgaatggcgattcaatcagtaaaatatat
gcaggcaccggagccctggaagggaaggccaagttaaaagatggtgcgcgatctgtcacc
agaaccattcagaataacttcttcgacagctccaagcaagaagccattgatgttctgctt
ctgggaaacactctgaacagcgacttagccgacaaagcccgggcacttctaactactggg
agtttgcgtgtgtctgaacagacattacagtcagcatcttccaaagtcttaaagaacatg
tgtgagaacttctacaagtactcaaagcccaagaagatccgagtgtgtgttggaacctgg
aatgtgaacggcgggaaacagttccgcagcatagcattcaagaaccagaccctcaccgac
tggcttcttgatgcacccaagttagctggcatccaggagtttcaagataagagaagtaag
ccaactgatatatttgcaattggctttgaagaaatggtggagctgaatgctgggaacatt
gtgaatgcaagcacaacaaaccagaagctgtgggcagtggaactgcagaagaccatctcc
agagacaacaagtatgttctcctggcctcggagcagttggtgggtgtctgcctgtttgtc
tttatcagaccgcagcatgctccctttatcagggatgttgcagtcgatactgtgaaaact
gggatgggaggcgcgactggaaataagggcgctgttgcaatccggatgctcttccacacc
accagcctttgctttgtctgcagtcactttgctgcaggccagtcccaagtcaaagagaga
aatgaagatttcgtagaaatagcacgaaaattgagtttccccatgggaagaatgctcttc
tcccatgattacgtattctggtgtggtgatttcaactatcgaatcgatcttcctaatgaa
gaagttaaagagctcataagacagcaaaattgggattctcttatagctggagatcaactc
atcaatcagaaaaatgcaggacagatctttagaggatttttagagggaaaagtaacgttt
gctccaacctataaatatgacttgttttccgaagactatgacaccagtgaaaagtgccgc
acccctgcttggacagaccgagtcctctggagaaggaggaagtggccttttgacagatca
gctgaagacttagatcttctgaatgctagtttccaagatgaaagtaaaatcctgtataca
tggactcctggcaccttgctgcactatggaagagccgagctgaagacttctgaccacagg
cccgttgtcgccctgatcgatatagatatatttgaagttgaagctgaagagagacaaaaa
atttataaagaagttattgcagtccagggcccaccggacggcacagtactggtctcaatc
aaaagttctgcacaagagaatactttctttgacgatgctttgatcgatgagcttctgcag
cagtttgcacacttcggcgaagttatacttataagattcgtagaagataaaatgtgggtt
acatttttggaggggagctctgccttgaatgttctgagcctaaatggtaaagagttatta
aatcggactataacaattactttaaaaagtccagactggatcaaaactttggaagaagag
atgagtttagagaaaatcagtgtcacattgccctcatcaaccagttccaccctgctcggt
gaagatgcagaggtctcagcggactttgacatggaaggtgatgtcgacgactacagtgct
gaggtggaggagcttcttcctcagcacctccagccatcctccagctctggcctcggcacc
tctccaagctcttcgccccggaccagtccctgccagtcacccacagcaccagagtactcc
gcaccttctcttcccatcagacctagtcgagcaccatcaagaactccaggacctctaagt
tcacagggtgctccagttgacacccagccagcagcccagaaggagtcttcccagaccata
gagcccaagaggccaccccctccccgcccagttgctcctccagcacgtcctgccccacca
cagaggccacctccaccttcaggggctaggagtccggcacctgctagaaaagaatttgga
gcacccaaaagcccgggaacagcacggaaagataatatagggcgtaatcagccttcccct
caagccggacttgcaggcccaggaccttctggatatggtgcagctagaccgacaattcca
gctcgtgctggagtgatcagtgcccctcagagccaggctcgggtgtctgctggaaggctg
actcctgaaagccaaagcaaacccttggagacatcgaaaggtcctgctgtccttccagaa
ccactgaagcctcaggctgcatttcctccgcagccttctctgcccacacctgctcaaaag
ttacaggacccacttgtccccatagcagcacctatgcctccctccattccccaatcgaat
ttggaaactccacccctgcccccacctcggagcaggtcatctcaaagcttgccttcagac
tcctcaccacagctacaacaggagcaaccaacagggtaa
DBGET
integrated database retrieval system