Rattus norvegicus (rat): 85251
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Entry
85251 CDS
T01003
Symbol
Col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain precursor
KO
K06823
collagen type XVIII alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
85251 (Col18a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rno04147
]
85251 (Col18a1)
00535 Proteoglycans [BR:
rno00535
]
85251 (Col18a1)
00536 Glycosaminoglycan binding proteins [BR:
rno00536
]
85251 (Col18a1)
Exosome [BR:
rno04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
85251 (Col18a1)
Proteoglycans [BR:
rno00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
85251 (Col18a1)
Glycosaminoglycan binding proteins [BR:
rno00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
85251 (Col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Laminin_G_2
DUF1554
Motif
Other DBs
NCBI-GeneID:
85251
NCBI-ProteinID:
NP_445941
RGD:
70936
Ensembl:
ENSRNOG00000001229
UniProt:
A6JK98
F1LR02
LinkDB
All DBs
Position
20:11473645..11582111
Genome browser
AA seq
1311 aa
AA seq
DB search
MAPRWHLLDMLTSLVLLLVARVSWAEPENVAEDVGLLQLLGDPLPQKISQVEDPHVGLAY
VFGPYSKSSQMAQYHFPKLFFRDFSLLFEVRPTTEAAGVLFAITDAAQVVVSLGVKLSEV
RDGQQNISLLYTEPGASQTQTGASFRLPAFVGQWTHFALSVDGSSVALYVDCEEFQRVPF
ARSPHGLELERGAGLFVGQAGAADPDKFQGMISELRVRKTPRVSPVHCLDEEDDDDDRAS
GDFGSGLEESSNLHRQETYLRPGLPQPPPVTSPPLAGGSATEDSRTEEKEEEATVDSKGA
DTLPVTDSSGVWDGDVQNPGGGLIKGGLKGQKGEPGAQGPPGPAGPQGPAGPAVQSPSSQ
PVPGAQGPPGPQGPPGKDGIPGRDGEPGDPGEDGRPGDTGPQGFPGTPGDVGPKGEKGDP
GIGPRGPPGPPGPPGPSFRQDKLTFIDMEGSGGFSGDLESLRGPRGFPGPPGPPGVPGLP
GEPGRFGVNSSYAPGPAGLPGVPGKEGPPGFPGPPGPPGKEGPPGVAGQKGSVGDAGSPG
PKGSKGDLGPIGMPGKSGLPGLPGPVGPPGPPGPPGPPGPGFAAGFDDMEGSGTPLWSTA
RSSDGLQGDPGVTGPPGAKGEVGADGVQGIPGLPGREGVAGPPGPKGEKGTQGEKGNPGK
DGVGRPGLPGPPGPPGPVIYVSNEDRAVVSTPGPEGKPGYAGFPGPAGPKGDLGSKGEQG
LPGPKGEKGEPGSIFSPDGTALGQAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRP
GTNGLKGEKGEPGEASLGFSMRGLPGPPGPPGPPGPPGVPVYDSNAFVESGRPGLPGQQG
VQGPPGPKGDKGEVGPPGPPGQFPIDLFHLEAEMKGDKGDRGDAGRKGERGEPGAPGGGF
FSSSVPGPPGPPGYPGIPGPKGESIRGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSF
PGPHRQTVSVPGPPGPPGPPGPPGAMGASAGQVRIWATYQTMLDKIREVPEGWLIFVAER
EELYVRVRNGFRKVLLEARTALPHGTDNEVAALQPPLVQLHEGSSYTRREHSYPTARPWR
ADDILANPPRLPDRQPYPGVPHHHHHHHHHHSSHEHRPPAHPSPSPAHTHQDFHPVLHLV
ALNTPLSGGMRGIRGADFQCFQQARAVGLSGTFRAFLSSRLQDLYSIVRRADRSSVPIVN
LKDEVLSPSWDTLFSGSQGQLHSGARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLMES
YCETWRTEATGVTGQASSLLSGRLLEQKAESCHNSYIVLCIENSFMTSFSK
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccaggtggcacctcctggacatgctcaccagtttggtcttgctgctggtggca
cgcgtctcctgggcagagccagagaatgttgctgaagatgtggggctcctgcagctcctc
ggagaccccctaccccagaagatctcccaagtcgaagaccctcatgtcgggctggcctac
gtctttggaccatactccaaaagtagtcagatggcccagtatcacttccctaaactcttc
ttccgggacttttcgctgctgttcgaagtccggccaaccacagaggccgcaggggtgctg
tttgctatcacagatgccgcccaggtggtggtctcgctaggcgtgaagctctcagaggtc
cgagatggacaacagaacatctcattgctctacacggagcccggggccagccagacccag
acgggagccagcttccgcctacctgcgtttgttggccagtggacacacttcgcgctcagc
gtggatggaagctccgtggctctctacgtagactgtgaagagttccagagagtgccgttc
gctcggtccccacacggtctggagctagagcgtggcgctggcctctttgtgggtcaggct
ggagcagcggaccctgacaagttccagggaatgatctcagagctgagagtacgcaaaacc
ccccgggtgagccctgtgcactgcctggatgaagaagatgatgatgacgaccgggcatct
ggagattttggaagtggcctcgaagaaagcagcaatttacacaggcaggagacatatcta
cgacccgggctcccccagccacctcctgtcacttccccgcccttggctggaggcagtgcc
accgaagattctaggacagaagaaaaggaggaagaagccacggtagattctaaaggagct
gatacccttcctgtcacagattcaagcggtgtgtgggacggggatgtccagaaccctgga
ggtggcttgataaagggaggtctcaaaggacaaaagggagagccaggtgctcaaggccca
cctggcccagctgggccccagggtcctgccggtccagcggtacagagccccagctcacaa
cctgtccctggagcacaaggacccccgggacctcagggaccaccagggaaggatggcatc
ccgggaagggatggtgaaccaggcgaccctggtgaagacgggaggccgggtgacactgga
cctcaaggcttcccggggaccccaggagatgtgggccctaagggtgagaagggagatcct
ggtattgggcctcgaggacctccaggacctccgggaccaccaggaccctccttcagacag
gacaagctgaccttcattgacatggagggatctggtggtttcagcggagacctagagagc
ctcagaggcccacgaggcttccctggtcccccaggtccccctggtgtcccaggactgcct
ggtgaaccagggcgctttggagtcaacagttcctacgcaccaggacctgcaggccttcct
ggtgtgcctgggaaggaagggccccctggttttcctggtcccccaggacctccaggcaaa
gagggcccaccaggagtggccggccagaaaggcagtgttggcgatgcaggcagcccagga
cccaaggggagcaaaggagaccttgggcccattggtatgcctgggaagtctggcttgccg
ggactccctgggccagttggacccccaggacctccagggcctccagggccaccaggacca
ggatttgctgctggatttgatgacatggaaggttctggaacacctctctggtcaacagcc
cgaagctccgatgggctgcagggggatcctggagtgactgggccacctggggccaaggga
gaagttggagcagacggagtccagggcatccctggtctcccaggaagagagggtgtagct
gggcccccgggacccaaaggagagaaagggacccagggagaaaagggaaacccaggaaaa
gatggagtaggtcggccaggcctccctggccctccaggccccccagggcctgtgatctat
gtgtcaaatgaggatagagctgtagtaagcacgccgggacctgagggcaagccagggtac
gcaggctttcctggacctgctggaccgaagggtgacctgggttccaaaggcgagcagggt
cttccagggcccaagggtgagaagggagaaccaggcagtatctttagccctgatggcaca
gccctgggccaggcccagaagggagccaagggagaaccaggcttccgaggacccccgggt
ccttatggacggcctgggtacaagggtgaaattggcttccctggacggccgggtcgtccc
ggaacaaatggcttaaagggagagaaaggggagcctggagaggccagccttgggttcagc
atgaggggactgcctggcccccctgggcctccaggccccccaggtcctcccggagtgccc
gtctatgacagcaatgcatttgtggagtctggccgacctggactaccaggacagcaaggt
gtgcaggggcctccaggaccaaagggtgacaaaggagaggtgggcccacccgggccacca
gggcagttccccattgacctcttccacctggaagccgaaatgaagggggacaagggagac
cgaggggatgctggacggaagggagagaggggagagcctggggctcctggtggtggattc
ttcagctcaagtgtacctggaccacctggcccacctggataccctggaattccgggtcca
aaaggagagagcattcggggtccgcctggccctcctggcccgcagggacctcctggcatt
ggatatgaggggcgccagggccccccaggacctccaggacctccaggacctccctcattc
cctggccctcatagacagactgtcagtgttcctggtcctccaggcccacctggcccccca
ggtcccccaggagccatgggtgcctctgctgggcaggtaaggatctgggctacataccag
accatgttggacaagatacgtgaggtgccagagggctggctcatctttgtggccgagagg
gaagagctctacgtacgggttagaaatggcttccgtaaggtgctgctggaggcccggaca
gccctcccgcacgggacggacaacgaggtagctgccttgcaacctccattggtacagctt
catgagggcagttcatatacccggagggagcactcctatcccacggcacgaccctggcga
gcagatgacatcttggccaacccaccacgtctgccggaccgccagccttacccgggagtt
ccacaccaccaccaccaccaccaccaccaccacagttctcatgaacaccggccgccagcc
cacccctccccctcacctgcccatactcaccaggactttcacccagtgctccacctggtg
gcactgaacacccctctgtctggaggcatgcgtggtatccgtggggctgacttccagtgc
ttccagcaagcccgagccgtggggctgtctggcacctttcgggccttcctgtcctctagg
ctgcaggacctctacagcattgtacgccgtgctgaccgcagctctgtgcccatcgtcaac
ctgaaggatgaggtactatctcccagctgggacaccctgttctccggctcccagggtcaa
ctgcactctggggcccgcatcttttctttcgacggcagagacgtcctgagacacccagcc
tggccacagaagagcgtatggcatggctcagaccccagtgggcgcaggctgatggagagc
tactgtgagacgtggaggactgaagctactggggttacaggtcaggcctcttccctgctg
tcgggcaggctcctggaacagaaggccgagagctgccacaacagctatatcgtcctgtgc
attgagaatagcttcatgacctctttctccaaatag
DBGET
integrated database retrieval system