Rattus norvegicus (rat): 85483
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Entry
85483 CDS
T01003
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform 2
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04612
Antigen processing and presentation
rno05145
Toxoplasmosis
rno05152
Tuberculosis
rno05164
Influenza A
rno05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
85483 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
85483 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
85483 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
85483 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
85483 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
rno01001
]
85483 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rno04054
]
85483 (Ciita)
Enzymes [BR:
rno01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
85483 (Ciita)
Protein kinases [BR:
rno01001
]
Serine/threonine kinases: Other
TAF1 family
85483 (Ciita)
Pattern recognition receptors [BR:
rno04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
85483 (Ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_14
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
85483
NCBI-ProteinID:
NP_001257732
RGD:
619813
Ensembl:
ENSRNOG00000002659
UniProt:
A0A0G2K9Q5
A6K4J5
LinkDB
All DBs
Position
10:complement(5646854..5694393)
Genome browser
AA seq
1073 aa
AA seq
DB search
MRCQVPGPSGSYLQGHTLCATMELGSPEGSYLELLNSDADPLHLYHLYDQMDLAGEEEIE
LNSETDMDTINCDQFSKLLQDMEMDEETREAYANIAELDQYVFQDTQLEGLSKDLFIQHI
GPEEGFGENVEGPAESGEKPQKRRFPEEHAMDSKHRKLVPPSRTSLNYLDLPAGHIQIFT
TLPQGLWQISGVGTGLSSVLVYHGEMPQVNQLLSSSSPTVPSLPESPDRPGSTSPFAPST
ADLPGMPEPALTSRVNETEDTTPPSPCQEDPEPSIKLPKWPESVERFQHSLQDKYQALPG
SPSGPLVAMELVRARLERGSNKSQERELATPDWTERQLAHGGLAEVLRVVGDSRRSRETQ
VVAVLGKAGQGKSHWARTVSHIWAQGQLPQYDFVFYVPCQCLDRPGDTYHLRDLLCPPNL
QPLAMDDEVIDHIVRQPDRVLLILDAFEELEAQDSLLHGPCGPLSPEPCSLRGLLAGLFQ
RKLLRGCTLLLTARPRGRLAQSLSKADAIFEVPSFSTKQAQIYMRHYFENSGTAGSHDKA
LGLLEGQPFLLTHSHSPVLCSAVCQLSKALLDQGAEAQLPCTLTGLYVGLLGPAAQNSPP
GALVELAKLAWELGRRHQSTLQETQFPSVEVKTWAVAQGLMQQTTEAQLAFSSFLLQCFL
GAVWLAQCNEMKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLVFQPRAHCLGALVEPA
MAAVADRKRKVLTRYLKRLKLGTLRAGRLLELLHCAHETQEPGIWKHVSHQLPGHLSFLG
TRLTAPDVYVLGRALETASQDFSLDLRQTGIEPSRLGDLVGLSCVTSFRASLSDTMALWE
SLQHQGETQLLQAAEEKFTIEPFKAKSPKDVEDLDSLVQTQRLRNPSADAAKDLPAIRDL
KKLEFALGPVLGPQAFPTLAKILPAFSSLQHLDLDSLSENKIGDKGVSKLSATFPQLKAL
ETLNLSQNSITDVGACKLAEALPALAKSLLRLSLYNNCICDEGAKSLARVLPDMVSLRVM
DVQFNKFTAVGAQQLTSSLQKCPQVETLAMWTPTIPFGVQEHLQQLDARISLR
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgccaggttcccggcccttctgggtcttacctgcaaggccatactctgtgtgcc
accatggagctggggtctccagagggcagctacctggagctccttaacagtgatgctgac
cccctacacctctaccacctctatgaccagatggaccttgctggggaggaagagatcgaa
ctcaactcagagacagacatggacaccatcaactgtgaccagttcagcaagctgttgcag
gatatggaaatggatgaagagacccgggaggcctatgccaatatcgcggaactggatcag
tacgtgttccaggatacccagctggagggcctgagcaaggacctcttcatacagcacatt
ggaccagaggaaggctttggtgagaacgtagagggccctgcagaatcaggagagaagcct
cagaagagacgcttcccagaagagcatgctatggactcaaagcacaggaaactagtgcct
ccctctaggacctcactgaactatttggatctccccgctgggcatatccagatcttcacc
actctgccccagggactctggcaaatctcaggggttggcacagggctctccagtgtccta
gtctaccacggtgagatgccccaggtcaaccaattactctcttcaagcagccccactgtc
cccagtctccccgagtccccagaccggcctggctccaccagccccttcgcgccatccaca
gctgacctgcccggcatgcctgaacctgctctgacctcccgtgtaaatgagacagaggac
acaacacccccctccccatgccaagaggatcccgagccttccatcaagcttccaaaatgg
ccagagtccgtggagcggttccagcactccctacaggacaagtaccaagcactgcccggg
agcccaagtggtcctctggtagccatggagctggtgcgggccaggttggaaagaggtagc
aacaagagtcaggaaagggagctggccactcctgactggacagagcgccagctagcccat
ggcggtctggccgaggtacttcgggttgtcggcgactccaggagatcacgagagacacag
gtggtcgctgtgctgggcaaggctggtcagggcaagagccactgggccaggacagtgagc
cacatttgggcacaaggccagttaccacaatatgactttgtcttctacgtcccctgtcaa
tgcttggatcgccctggggacacctaccacctgcgggatctgctctgtcccccgaacctg
cagccactggccatggatgacgaggtcattgatcatattgtgaggcagccggaccgtgtt
ctgctcatcctagatgcttttgaggagctagaggcccaagacagcctcctgcatggaccc
tgtggacctctgtccccagagccctgctccctccggggactgctggctgggctcttccag
cgtaagctgctgcgaggctgcaccctgctcctcacagcccggccccggggccgcctggct
cagagcctgagcaaggcagatgccatcttcgaggtgcccagcttctctacgaaacaggcc
cagatctatatgaggcactactttgagaactcagggacagcagggagtcacgacaaggcc
ctgggcctcctggagggccagccttttctcctcacccacagtcacagccctgttctgtgc
agtgccgtgtgtcagctctccaaggccctgctggatcagggcgcagaggcccagctacct
tgcacactcacaggactctatgttggcctgctaggccctgcagctcagaacagtcctcct
ggagccttagttgagttggccaagctagcctgggagctgggacggaggcaccaaagcacc
ttgcaggaaacccagtttccatccgtggaagtgaagacctgggctgtggcccaaggcttg
atgcagcagaccacagaggcccaactggctttctccagttttctgctacagtgcttcctg
ggtgctgtgtggctggcacagtgcaatgagatgaaagacaaggagctgccacagtacctg
gccttgaccccgaggaagaagcgaccctatgacaactggctggagggcgtaccacgcttt
ctggctggcttagttttccagcctcgagcccactgcctgggagctctggtggagcctgca
atggctgcagtggcagataggaaacggaaggttcttaccaggtacctgaagcgcttgaag
ctggggacacttcgggccgggaggttgctggagctgctacactgtgcccacgaaacacag
gaacctggtatttggaagcatgtttcacaccagctcccagggcacctctccttcctgggc
acacggctcacagccccagatgtgtatgttctgggcagggccttggagacagccagccag
gacttctccttggaccttcgtcagactggcatcgagccctccagactgggagacctcgtg
ggactcagctgtgtcaccagtttcagggcctccttgagtgacacaatggcattatgggag
tccctacagcatcagggagaaacccagctactccaggcggcagaggagaagttcaccatt
gagccatttaaggccaaatccccaaaggatgtggaagacctggacagccttgtgcagacc
cagaggctgagaaacccctcagcggatgcagccaaggatcttcctgccatccgggacctt
aagaagctagagtttgcattgggccccgtcttgggcccgcaggctttccccacactggcc
aagatccttccagcattctcttccctgcagcacctggacctggactcacttagcgagaac
aagatcggggacaagggtgtgtcgaagctctcagccaccttccctcagctgaaggccctg
gagacgctcaacctgtcccagaatagcatcaccgatgtgggagcttgcaagcttgcagaa
gccctgccggccctggccaagtccctcctaaggctgagcttgtacaacaactgcatctgt
gacgaaggggccaagagcctggcacgagtgcttccagacatggtgtccctccgggtgatg
gatgtccagttcaacaagttcacggctgtcggggcccagcagctgacctccagccttcag
aagtgccctcaggtggagacactggcaatgtggacacccactatcccctttggggtccag
gaacacctgcagcagctggatgcccggattagcctgagatga
DBGET
integrated database retrieval system
