Rattus norvegicus (rat): 85490
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Entry
85490 CDS
T01003
Symbol
Col5a1
Name
(RefSeq) collagen alpha-1(V) chain precursor
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04820
Cytoskeleton in muscle cells
rno04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
85490 (Col5a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
85490 (Col5a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rno00536
]
85490 (Col5a1)
Glycosaminoglycan binding proteins [BR:
rno00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
85490 (Col5a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
ConA_2nd_BAM2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
85490
NCBI-ProteinID:
NP_604447
RGD:
70920
Ensembl:
ENSRNOG00000008749
UniProt:
Q9JI03
LinkDB
All DBs
Position
3:31606475..31755097
Genome browser
AA seq
1840 aa
AA seq
DB search
MDVHTRWKAPRPGAPLLSSPLLLLLLLLWAPPPSRAAQPTDLLEMLDFHNLPSGVTKTTG
FCATRRSSKEPDVAYRVSKDAQLSMPTKQLYPESDFPEDFSILTTVKAKKGSQAFLVSVY
NEQGIQQLGLELGRSPVFLYEDHTGKPGPEEYPLFPGINLSDGKWHRIAISVYKKNVTLI
LDCKKKITKFLNRGDHPIIDVNGIIMFGSRILDDEIFEGDIQQLLFVSDHRAAYDYCEHY
SPDCDTAVPDTPQSQDPNPDEYYPEGEGETYYYEYPYYEDPEDPGKEPAPSQKPVEAARE
TTEVPEEQTQPPSEAPTVPETSDTAGKEDNPGIGDYDYVPTDDYYTTSPYEDFGYGEGVE
NPDQPTNPDSGAEIPTSTSVTSNSSNPAPSPEEGKDDLGGEFTEETIKNLDENYYDPYFD
PDSDSNVSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAG
LPGPPGTTGPTGQMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPM
VSAQESQAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEPGDMGPQGPRGVQG
PPGPTGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGLPG
DDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPG
PPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQG
PPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRG
EDGPEGPKGRGGPNGDPGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKG
GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG
FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPG
PPGPPGEQGLPGAAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGSEG
PPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGVPGEKGPQGPAGRDGLQG
PVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADG
EPGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRG
PSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPLGPKGERGEKGEAGPSG
AAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPG
PTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDG
LRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQG
EKGDRGLPGPQGSSGPKGEQGITGPSGPLGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAG
HPGLPGPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGAGESYVDYADGMEEIFGSLNSL
KLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGS
TCVFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASA
QQNITYNCYQSVAWQDAATGSYDKAIRFLGSNDEEMSYDNNPYIRALVDGCATKKGYQKT
VLEIDTPKVEQVPIVDIMFTDFGEASQKFGFEVGPACFLG
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atggacgtacacacccgctggaaagctccgcgcccgggcgccccgctgctgtcctcgccg
ctgctcctgctcctgctgctgctgtgggcgccgcctccgagccgcgcagctcagccaaca
gatcttctggagatgctagattttcacaatttgccctcaggcgtaacgaaaaccacaggt
ttctgtgccactcgacgatcttccaaagagccggatgttgcctaccgagtctctaaagat
gcacagctcagcatgcccaccaagcagctgtaccctgagtctgactttcctgaggacttc
tccatcctgacaaccgtgaaagccaagaaaggcagtcaggccttcctggtctccgtttac
aatgagcagggcatccagcagttgggactggagctgggccgctcccctgtcttcctctat
gaggaccacacagggaagcccgggcctgaagagtatccactcttccctggcatcaacctg
tccgatggcaagtggcaccgaatcgctatcagtgtatacaagaaaaatgtcaccttgatc
ctcgactgtaaaaagaagatcacgaagttcctcaaccgcggcgaccaccccataatagat
gtcaacggtatcatcatgtttggctcccggattctggatgatgaaatatttgagggtgac
atccaacagttgctcttcgtctccgaccaccgagctgcctatgattactgtgagcactac
agccccgactgtgacacagcggtccctgacacacctcagtcacaggaccctaacccagat
gaatattacccagaaggagagggtgagacctattactatgagtacccatattatgaagac
cctgaagacccgggaaaggagcccgccccctctcagaagccagtggaagccgccagagaa
accacggaggttcctgaggagcagacccagcccccatccgaagcccctacagtgcctgag
accagtgacacggctggcaaggaggacaatccagggatcggggactacgactatgtgccc
actgacgactactacactacatccccgtatgaagacttcggctatggcgagggcgtggag
aaccccgaccagcccaccaaccctgactcaggggccgagatccccaccagcaccagtgtt
acctccaattcctccaatccggctccatctccagaggaagggaaggatgacctgggaggt
gagttcaccgaggagaccatcaagaatctagatgaaaactactatgacccgtactttgac
ccggactccgactccaatgtctctccatcggagatagggccaggcatgcctgctaaccag
gacaccatctatgaagggattggaggaccccgaggtgagaaagggcaaaagggagaacca
gccatcattgagccgggaatgctgatagaggggccccctggccctgaaggccctgctggt
cttccaggacctccaggaactacgggtcctactggccaaatgggtgaccctggagaaagg
ggtccccctgggcgcccaggtcttcctggggctgatggcttgcctggtccccccgggacc
atgctcatgctgccgttccgttttggaggtggtggcgacgccggttctaagggccccatg
gtctctgcccaggaatcccaggcacaggctatcctccagcaagccaggttggcactaagg
ggaccagctggtccaatgggtctcaccgggagacctggccccatgggtcctcctgggagt
ggaggtttgaagggtgagccaggagacatgggacctcagggtcctcgaggtgtgcaaggt
ccacccggcccaacagggaagcctggaagacggggccgtgctgggagtgatggtgccaga
ggcatgcctggacaaacaggccccaagggtgaccgtggctttgatggtctggctgggttg
ccgggagagaaaggccatagaggtgaccctggtccttctggcccgccgggactcccagga
gatgatggagaaaggggtgacgatggagaagttgggcccagggggctgcctggggagcct
ggaccacgtggtctgcttgggccaaaaggcccccctggcccacctggacctcctggtgtg
acgggtatggatggccagcctggccccaaaggaaatgtgggtccccagggagagcctggg
cccccaggacagcagggtaatcctggtgcccagggtcttcccggtccccagggtgccatt
ggtcctccaggagaaaagggtcctttggggaaaccaggtctcccaggaatgcccggagct
gatggacccccggggcaccctggcaaagaaggtcctccaggagagaaaggaggccagggt
cctcccggcccccagggtcccattggctacccaggtccacgaggagtcaagggggcagat
ggcatccgagggctgaagggcaccaagggagagaagggtgaagacggcttccctgggttt
aaaggcgacatgggaataaagggtgaccggggggagatcggcccacccggcccccgagga
gaagatggtcctgaaggcccaaaaggtcgaggtggtcccaatggtgatcctggtcccctg
gggcccaccggggagaagggaaagctcggagtgcctggattaccagggtacccaggaaga
caagggccaaagggttctattggattccctggcttcccgggcgccaacggagagaaaggt
ggcagggggacacctggaaagccaggaccacggggacagcgaggcccaacgggcccgagg
ggtgaacgaggcccacggggcatcactgggaagcctggccctaagggcaactcaggaggt
gatggcccagccggccctcctggtgagcggggacccaatggaccccaaggccccaccggc
ttccctggacctaagggtcccccgggtccaccaggcaaggacgggctccccggacatcct
gggcagagaggggagactggtttccaaggcaagactggccctccaggccctccaggagtg
gttggccctcagggtcccacaggcgagacgggtcccatgggagagcgtggccaccctggt
cctccaggcccccctggtgaacagggcctcccaggtgctgctgggaaagaagggacgaag
ggtgacccaggtcctgctggcctccctgggaaggatggacctccaggattgcgtggattc
cctggggaccgagggctccccggccccgtgggagcactcggactgaaaggcagcgaaggc
ccccctggccccccaggtcctgcgggttctccaggggagagaggaccagctggtgctgct
ggacccattggaattccagggagacctgggcctcagggacctccggggcctgctggagag
aaaggggttcctggagagaaaggtccgcaaggcccggctggccgagatggcctgcaaggt
cccgtggggctccctggaccagccggccccgtgggtcctcctggagaagatggagataag
ggagagatcggagagcccgggcagaaagggagcaagggcgacaaaggcgagcagggtcct
cctgggcctaccggtcctcaaggccccattgggcagccaggcccttcgggagcagatggt
gaacctggccctcgtggacagcagggcctgtttgggcagaaaggagatgaaggttcaaga
ggtttcccaggaccgccagggccagtgggcttgcagggtttaccaggacctccaggagaa
aagggtgagacaggagacgtgggccagatgggccctcctggtccaccaggcccccgagga
ccctctggagctccaggagctgatgggccacagggtcctccaggagggattggcaaccct
ggtgcagtcggagaaaagggagagcctggcgaagctggagagcctggccttccaggagaa
ggaggtcccctgggacctaaaggagaaagaggggagaagggagaggctggcccctctggt
gctgctggaccccctggacccaaaggcccacctggagatgatggccccaaaggcagcccc
ggccccgtgggctttcctggagaccctgggccccctggagagccaggcccagcaggtcaa
gatggcccacctggtgacaaaggggatgatggagaacctgggcagacgggatccccaggc
cctactggtgaacctggtccatctgggcctccaggaaagaggggtccaccgggccctgca
ggccctgaaggcaggcagggggagaaaggagccaagggagaagctggcttagaaggccct
cctgggaagactggccccattggtccccaaggggcccctgggaagcctggccctgatggt
cttcgtgggatccctggtcctgtgggtgagcaaggcctcccaggatccccaggccctgat
ggtccacccggccccatgggtcctccaggactccctggcctcaaaggagactccggtccc
aaaggtgaaaagggccatccgggcctgattggactcatcggacctccgggcgaacaaggt
gaaaaaggtgaccgaggactcccaggcccccagggctcatctggtcctaaaggagaacag
ggcattacaggtccttctggcccgcttgggcctcctggtcccccaggcttgccgggccct
ccaggtcccaaaggtgctaaaggttcatcgggtcccactggcccgaagggcgaggcaggc
catccaggactccctggtccacccgggcctccaggcgaggtcatccagcccctgccaatc
caggcgtccaggactcggcggaacattgatgccagtcagctcctggatgatggggctggg
gagagctacgtggattatgcagatggcatggaagagatctttggttccctcaactccctg
aagctggagattgagcagatgaagcggccactgggcacacagcagaacccagcccgtacc
tgcaaggaccttcaactctgccatcctgatttcccagacggcgaatactgggtcgatccc
aaccaagggtgctccagggactccttcaaagtctactgcaatttcacagctggagggtcc
acgtgcgtcttccctgacaagaagtctgagggagccagaatcacttcttggcccaaagaa
aacccaggttcctggttcagtgaattcaagcgtgggaaactgctctcctatgtggatgct
gaaggcaaccctgtgggcgtggtacaaatgaccttcctgcggctgctgagtgcctctgcc
cagcagaacatcacctacaactgctaccagtccgtggcctggcaggatgccgccacaggc
agctacgataaggctatccgcttcttgggctccaacgatgaggaaatgtcttatgataac
aacccctacatccgtgccctggtggatggctgtgctaccaagaaaggctaccagaagacg
gtgctggagattgacacgcccaaagttgagcaagtccccattgtggacatcatgttcacc
gactttggtgaagcctcacagaaatttggatttgaagtagggccagcttgcttcctaggc
tag
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