Rattus norvegicus (rat): 89821
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Entry
89821 CDS
T01003
Symbol
Trpc1
Name
(RefSeq) short transient receptor potential channel 1 isoform 2
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04360
Axon guidance
rno04724
Glutamatergic synapse
rno04726
Serotonergic synapse
rno04929
GnRH secretion
rno04972
Pancreatic secretion
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
89821 (Trpc1)
09154 Digestive system
04972 Pancreatic secretion
89821 (Trpc1)
09156 Nervous system
04724 Glutamatergic synapse
89821 (Trpc1)
04726 Serotonergic synapse
89821 (Trpc1)
09158 Development and regeneration
04360 Axon guidance
89821 (Trpc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rno04040
]
89821 (Trpc1)
Ion channels [BR:
rno04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
89821 (Trpc1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
DUF6779
Motif
Other DBs
NCBI-GeneID:
89821
NCBI-ProteinID:
NP_446010
RGD:
619783
Ensembl:
ENSRNOG00000054902
UniProt:
Q9QX01
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Position
8:complement(105142931..105193842)
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AA seq
759 aa
AA seq
DB search
MMAALYPSTDLSGVSSSSLPSSPSSSSPNEVMALKDVREVKEENTLNEKLFLLACDKGDY
YMVKKILEENSSGDLNINCVDVLGRNAVTITIENESLDILQLLLDYGCQKLMERIQNPEY
STTMDVAPVILAAHRNNYEILTMLLKQDVALPKPHAVGCECTLCSAKNKKDSLRHSRFRL
DIYRCLASPALIMLTEEDPILRAFELSADLKELSLVEVEFRNDYEELARQCKMFAKDLLA
QARNSRELEVILNHTSSDEPLDKRGLLEERMNLSRLKLAIKYNQKEFVSQSNCQQFLNTV
WFGQMSGYRRKPTCKKIMTVLTVGIFWPVLSLCYLIAPKSQFGRIIHTPFMKFIIHGASY
FTFLLLLNLYSLVYNEDKKNTMGPALERIDYLLILWIIGMIWSDIKRLWYEGLEDFLEES
RNQLSFVMNSLYLATFALKVVAHNKFHDFADRKDWDAFHPTLVAEGLFAFANVLSYLRLF
FMYTTSSILGPLQISMGQMLQDFGKFLGMFLLVLFSFTIGLTQLYDKGYTSKEQKDCVGI
FCEQQSNDTFHSFIGTCFALFWYIFSLAHVAIFVTRFSYGEELQSFVGAVIVGTYNVVVV
IVLTKLLVAMLHKSFQLIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNIIPSPKTICYM
ISSLSKWVCSHTSKGKVRRQNSLKEWRNLKQKRDENYQKVMCCLVHRYLTSMRQKMQSTD
QATVENLNELRQDLSKFRNEIRDLLGFRTSKYAMFYPRN
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggccctgtacccgagcacggacctctctggcgtctcctcctcctccctgcct
tcctccccatcctcctcatcgcccaacgaagtgatggcgctgaaggatgtgcgagaggtg
aaggaggagaacaccttgaatgagaagcttttcttgctggcgtgcgacaagggtgactat
tatatggttaaaaagattttggaggaaaacagttcaggtgacttgaacataaattgcgta
gatgtgcttgggagaaatgctgttaccataactattgaaaacgaaagcttggatatactg
cagctgcttttggactacggttgtcagaaacttatggaacgaattcagaatccggaatac
tcaacaacgatggatgttgcaccagttattttagctgctcatcgtaacaactatgagatc
ctcacaatgcttctgaagcaggacgtggctttgcccaagccccatgctgttggctgtgaa
tgcacgctgtgttctgcgaaaaacaaaaaggacagcctcagacattccaggtttcgtctt
gatatctatagatgtctggccagtccagctctaataatgttaacagaggaggatccaatt
ctgagagcgtttgaacttagtgctgacttaaaggaactcagccttgtggaggtggaattc
aggaatgactatgaagagctagcccgtcagtgcaaaatgtttgctaaagatttgcttgcg
caagctcggaattctcgtgaactggaagttatcctaaaccatacatctagtgatgagcct
cttgacaaacgaggactactagaagaaagaatgaatttaagtcgtctgaaacttgctatc
aaatataaccagaaggagtttgtctcccagtcaaattgccagcagttcctgaacaccgtt
tggttcggacagatgtcaggttaccgccgtaagcccacctgtaagaagataatgactgtt
ttgacagttggcattttctggccagttctgtcactgtgttacttgatagctcccaaatct
caattcggcagaatcattcacacaccgttcatgaagtttattattcatggagcttcatat
ttcacattcttgctgttactcaatctctactcacttgtctacaatgaggacaagaaaaat
acaatggggccagcccttgagagaatagactaccttctcatactgtggattattgggatg
atttggtcagacattaagaggctgtggtatgaagggttggaagacttcttagaagaatct
cgtaaccagctcagctttgttatgaattccctttacttggcaacttttgccctcaaagtg
gtggctcacaacaagtttcatgattttgccgaccggaaggactgggatgcgttccacccc
acactggtagcagaagggcttttcgcctttgcaaacgttctgagttaccttcggctcttc
tttatgtacacaaccagctctattttgggcccactgcagatttcaatgggacagatgtta
caagattttgggaaatttctaggaatgttccttcttgttctgttttccttcacgattgga
ctgacacagctctatgacaaagggtacacttccaaagagcagaaggactgcgtaggcatc
ttctgtgaacagcaaagcaacgacaccttccactcgttcattggcacctgctttgctctg
ttctggtacatcttctccttagcgcatgtggccatctttgtcaccaggtttagctatggg
gaagaactgcagtccttcgttggggctgtgattgtcggaacttacaatgtcgtggttgtg
atcgtgcttacaaagctactggtagcgatgcttcataagagcttccagctgatagcaaat
catgaggataaagaatggaagtttgctcgagcgaagctatggctcagctactttgatgac
aaatgcacactgcccccacctttcaacatcattccttctccaaagactatctgctatatg
atcagcagcctcagcaagtgggtgtgctcgcacacctccaaaggcaaggtcagacggcag
aacagcttgaaggagtggagaaacttaaaacaaaagagagatgagaactaccagaaggtg
atgtgctgcctagtgcatcgatacctgacctccatgcgacagaagatgcagagcacagac
caggccaccgtggagaatctcaatgaactgcgccaagatctgtcaaaattcagaaatgaa
ataagggatttgcttggctttcggacttctaaatatgctatgttttatccaagaaattag
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