Rattus norvegicus (rat): 89827
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Entry
89827 CDS
T01003
Symbol
Ddx39a
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rno03041
]
89827 (Ddx39a)
Enzymes [BR:
rno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
89827 (Ddx39a)
Spliceosome [BR:
rno03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
89827 (Ddx39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
89827
NCBI-ProteinID:
NP_446015
RGD:
619920
Ensembl:
ENSRNOG00000004373
UniProt:
Q5U216
A6IYD0
LinkDB
All DBs
Position
19:complement(41323465..41331413)
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AA seq
427 aa
AA seq
DB search
MAEQDVENELLDYDEDEEPQVPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCH
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVR
SRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCM
ALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacaggatgtggaaaatgagcttttggattatgatgaagatgaagagccccag
gtaccccaggagagcactccagctcccccgaagaaagatgtcaaaggatcttatgtctcc
atccacagttctggcttccgggactttctgctgaagccggagctcctgagagctatagtt
gactgtggctttgaacatccttcagaggtccagcatgaatgtattccccaggccattctg
ggtatggatgtcctgtgccaagccaagtctgggatgggcaagacagctgtgtttgtgctg
gccaccctgcagcagattgaacccatcaatggccaggtatcagtactggtcatgtgccac
acaagggagctggccttccagatcagcaaggagtatgagcgcttctcgaagtacatgccc
agtgtcaaggtatctgtgttctttggaggcctctccattaagaaagatgaagatgtgtta
aagaagaactgtccccatgttgtggtggggacaccaggccggatcctggccctcgtgcgg
agcaggagcctcaacctgaggaatgtgaagcactttgtgctagatgaatgtgacaagatg
ctggaacagctggacatgcgccgggatgtacaggagatctttcgtctgacaccccatgag
aagcaatgtatgatgttcagcgccaccctgagcaaggagatccggccagtctgcaggaag
ttcatgcaggatcctatggaggtgtttgtggacgacgagaccaagctcacactgcatggg
ctgcagcagtattacgtcaaactcaaggacagtgagaagaatcgtaaactcttcgacctc
cttgacgtgctagagtttaaccaggtggtgatctttgtcaagtctgtgcagcgctgcatg
gccctggcccagctcctagtggaacagaattttccggctatcgctattcacagaggcatg
gcccaggaggagcgcctgtcccgataccagcagttcaaggacttccagcgtcgcatccta
gtggctactaatctgtttggcagaggcatggacattgagagagtcaacatcgtcttcaac
tatgacatgccagaggactcggatacctacctgcaccgagtggctcgtgctggtcgcttt
ggtaccaagggtctggcagtcacttttgtgtcagatgagaatgatgccaaaatccttaat
gacgttcaggaccggtttgaagtgaatgtggctgagcttccagaagaaatagatatctcc
acatacattgagcagagccggtaa
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