Rattus norvegicus (rat): 89830
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Entry
89830 CDS
T01003
Symbol
Ptch1
Name
(RefSeq) protein patched homolog 1 isoform 2
KO
K06225
patched 1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04024
cAMP signaling pathway
rno04340
Hedgehog signaling pathway
rno04360
Axon guidance
rno05200
Pathways in cancer
rno05205
Proteoglycans in cancer
rno05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
89830 (Ptch1)
04024 cAMP signaling pathway
89830 (Ptch1)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
89830 (Ptch1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
89830 (Ptch1)
05205 Proteoglycans in cancer
89830 (Ptch1)
09162 Cancer: specific types
05217 Basal cell carcinoma
89830 (Ptch1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
MENTAL
Motif
Other DBs
NCBI-GeneID:
89830
NCBI-ProteinID:
NP_001376185
RGD:
621425
Ensembl:
ENSRNOG00000019354
UniProt:
A0A0G2JVB8
LinkDB
All DBs
Position
17:1548449..1613461
Genome browser
AA seq
1382 aa
AA seq
DB search
MGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVE
ELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTTEALLQHLDSALQAS
RVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTA
YLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPA
TAPNKNSTKPLDVALVLNGGCQGLSRKYMHWQEELIVGGTVKNATGKLVSAHALQTMFQL
MTPKQMYEHFRGYDYVSHINWNEDRAAAILEAWQRTYVEVVHQSVAPNSTQKVLSFTTTT
LDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALSVAAGLG
LCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGA
SVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDR
RLDIFCCFTSPCVSRVIQVEPQAYTEPHSNTRYSPPPPYSSHSFAHETHITMQSTVQLRT
EYDPHTHVYYTTAEPRSEISVQPVTITQDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPP
CTKWTLSSFAEKHYAPFLLRPKAKVVVILLFLGLLGVSLYGTTRVRDGLDLTDIVPRETR
EYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFSSVKYVMLEENKQLPQMWLH
YFRDWLQGLQDAFDSDWETGRIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKQR
LVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAA
EPIEYAQFPFYLNGLRDTSDFVEAIEKVRVICNNYTSLGLSSYPNGYPFLFWEQYISLRH
WLLLAISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVIL
IASVGIGVEFTVHVALAFLTAIGDKNHRAMLALEHMFAPVLDGAVSTLLGVLMLAGSEFD
FIVRYFFAVLAILTVLGVLNGLVLLPVLLSFFGPCPEVSPANGLNRLPTPSPEPPPSVVR
FAVPPGHTNNGSDSSDSEYSSQTTVSGISEELRHYEAQQGTGGPAHQVIVEATENPVFAR
STVVHPDSRHQPPLNSRQQPHLDSGSLSPGRQGQQPRRDPPREGLRPPPYRPRRDAFEIS
TEGHSGPSNRDRSGPHGARSHNPRNPTSTAMGSSVPSYCQPITTVTASASVTVAVHPPPG
PGRNPRGGPCPGYESYPETDHGVFEDPHVPFHVRCERRDSKVEVIELQDVECEERPWGSS
SN
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggggaaggctactggccggaaagcgccgctgtggctgagagcgaagtttcaaagactc
ttatttaaactgggttgttacattcaaaagaactgcggcaagtttttggttgtgggtctc
ctcatatttggggccttcgctgtgggattaaaggcagctaatctcgagaccaacgtggag
gagctgtgggtggaagttggtggacgagtgagtcgagaattaaattatacccgccagaag
ataggagaagaggctatgtttaatcctcaactcatgattcagactccaaaagaagaaggc
gctaatgtcctgaccacagaggccctactacaacacctggactcagcactccaggccagc
cgtgtgcacgtctacatgtataacaggcaatggaagttggaacatttatgctacaaatca
ggggaacttatcacagagacaggctacatggatcagataatagaatacctttacccttgc
ttaatcattacacctttggactgcttctgggaaggggcaaagctacagtccgggacagcg
tacctcctaggtaagcctcctttacggtggacaaactttgaccccttggaattcctagaa
gagttaaagaaaataaactaccaagtggacagttgggaggaaatgctgaataaagccgaa
gttggccatgggtacatggaccggccttgcctcaatccagccgacccagattgccctgcc
acagcccccaacaaaaattcaaccaaacctcttgatgtggcccttgttttgaacggtgga
tgtcaaggtttatccaggaagtatatgcattggcaggaggagttgattgtgggtggcacc
gtcaagaacgccactggaaagcttgtcagcgctcatgccctgcaaaccatgttccagtta
atgactcccaagcaaatgtatgaacacttcaggggctacgactatgtctctcacatcaac
tggaatgaggatagggcagccgccatcctggaggcatggcagaggacttacgtggaggtg
gttcatcaaagtgttgccccaaactccactcaaaaggtgctttccttcaccaccacgacc
ctggacgacatcctaaaatccttctctgatgtcagtgtcatccgagtggccagtggctac
ctactgatgcttgcctatgcctgtttaaccatgctgcgctgggactgctccaagtcccag
ggtgccgtggggttggctggtgtcctgttggttgcactgtcagtggctgcaggattgggc
ctctgctccttgattggcatttcctttaatgctgcaacaactcaggttttgccatttctt
gcccttggtgttggtgtggacgacgtctttctcctggcccatgcattcagtgaaacggga
cagaataagaggattccatttgaggacaggactggggagtgcctcaagcgcacgggagcc
agcgtggccctcacctccatcagcaatgtcactgccttcttcatggctgcattaatccct
attcctgcactgcgagcgttctccctccaggctgctgtggtggtggtattcaattttgcc
atggttctactcattttccctgcaattctcagcatggatttatacagacgtgaggacaga
agattggatattttctgctgtttcacaagcccctgtgtcagccgggtgattcaagttgaa
ccgcaggcctacacagagcctcatagtaacacccggtacagccccccacccccgtacagc
agccacagcttcgcccatgaaacccacatcaccatgcagtccaccgttcagctccgcaca
gaatatgaccctcacacacacgtctactacaccaccgccgagccgcgctctgagatctct
gtacagcctgtcaccatcacccaggacaccctcagctgtcagagccctgagagcaccagt
tccacccgggacctgctttctcaattctctgactccagcctccactgccttgagcccccc
tgcaccaagtggacactttcttcgtttgcagagaagcactacgctcctttcctcttgaga
cccaaagccaaggttgtggtaatccttcttttcctgggcttgctgggcgtcagcctttat
gggaccacccgagtgagagacgggctggacctcacggacattgtcccccgggaaaccaga
gaatatgacttcatagctgcccagttcaagtacttctctttctacaacatgtatatagtc
acccagaaagcagactacccaaatatccaacacctgctttacgaccttcataagagtttc
agcagtgtgaagtatgtcatgctggaggagaacaagcaacttccccaaatgtggctgcat
tactttagagactggctccaaggacttcaggatgcatttgacagtgactgggaaaccggg
aggatcatgccaaacaattataaaaatggatctgatgatggggtcctcgcttacaaactc
ctggtgcagactggcagccgagacaagcccatcgacattagtcagttgactaaacagcgt
ctggtggacgcagatggcatcattaatccgagcgctttctacatctacctgaccgcttgg
gtcagcaatgaccctgtagcttacgctgcctcccaggccaacatccggcctcacagacca
gagtgggtgcacgacaaagctgactacatgccagagaccaggctgagaatcccagcagca
gagcccatagagtacgctcagttccctttctacctcaacggcctacgggacacctcagac
tttgtggaagccatagaaaaagtgagagtcatctgtaacaactacacgagtctggggctg
tccagctaccccaatggctaccccttcctgttctgggagcagtacatcagcctgcgtcac
tggctgctgctagccatcagcgtggtgctggcctgcacatttctagtgtgcgcagtcttc
ctcctgaacccctggacggccgggatcattgtcatggtcctggctttgatgaccgttgag
ctcttcggcatgatgggcctcattgggatcaagctgagtgctgtgccggtggtcatcctg
attgcgtctgttggcattggagtagaattcaccgtccacgtggctttggcctttctgaca
gccattggggacaagaaccacagggctatgctcgccctggagcacatgttcgctcctgtt
ctggacggtgctgtgtccactctgctgggtgtactgatgcttgcgggatccgaatttgac
ttcattgtcagatacttctttgccgtcctggccatcctcaccgtcttgggagttctcaac
ggactggttctgctgcctgtactcttatccttcttcggaccatgtcctgaggtgtctcca
gccaacggcctaaaccggctgcccactccttcgcctgagccgcccccaagcgtcgtccgg
tttgccgtgcctcctggtcacacgaacaatgggtctgattcctccgactccgagtacagc
tctcagaccacggtgtctggcatcagtgaggagctcaggcactatgaagcacagcagggc
accggaggtcctgcccaccaagtgattgtggaagccacagaaaaccccgtctttgcccgg
tccactgtggtgcatcctgactccagacatcagcctcccttgaactctcggcaacagccc
cacctggactctggctccctgtcccctggacggcaaggccagcagcctcgaagggatccc
cccagagaaggcttgcggccacccccctacagaccgcgcagagacgcttttgaaatttct
actgaagggcattctggccctagcaatagggaccgctcgggcccccatggggcccgttct
cacaaccctcggaacccaacgtccactgccatgggcagctctgtgcccagctactgccag
cctatcaccactgtgacggcttccgcttctgtaactgtcgctgtgcaccccccacctgga
cctgggcgcaacccccgagggggaccctgtccaggctacgagagctaccccgagactgat
cacggggtgttcgaggatccccatgtgccttttcatgtcaggtgtgagaggagggactcg
aaggtggaggttatagaactacaggacgtggagtgtgaggagaggccgtgggggagcagc
tccaactga
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integrated database retrieval system