Rhodococcus opacus PD630: Pd630_LPD00548
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Entry
Pd630_LPD00548 CDS
T03071
Name
(GenBank) NaeI very short patch repair endonuclease
KO
K07458
DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
Organism
roa
Rhodococcus opacus PD630
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roa03400
]
Pd630_LPD00548
DNA repair and recombination proteins [BR:
roa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
Pd630_LPD00548
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Gene cluster
GFIT
Motif
Pfam:
Vsr
MTES_1575
DUF559
Ig_NUP210_15th
Motif
Other DBs
NCBI-ProteinID:
AHK27789
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All DBs
Position
complement(542635..543039)
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AA seq
134 aa
AA seq
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MPATDPATSARMRSQRRRDTAPELALRRELHRRGVRYYVDRAPVKGVRRRADLVFPRRKV
AVYVDGCFWHSCPQHATFPKNNAQWWAEKLAGNVTRDRDTDARLTDAGWTVVRIWEHENP
VVAADRVQEALDDA
NT seq
405 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccaccgatcccgcaaccagcgcccggatgcggtcgcagcggcgtcgcgacacc
gcacccgaactcgcactgcgccgggaactgcaccggcgcggggtccggtactacgtggac
cgggcgccggtgaagggcgtccggcggcgcgccgacctggtgtttccgcgacggaaggtg
gccgtgtacgtggacgggtgcttctggcacagctgccctcagcacgccacgttcccgaag
aacaacgcgcaatggtgggccgagaaactcgccgggaacgtcacccgcgatcgtgacacc
gacgcgaggctgaccgacgccgggtggacggtggtgcggatctgggaacacgagaatccg
gtggtcgccgcggacagggtccaggaagctctggacgacgcgtga
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