Rhodococcus opacus PD630: Pd630_LPD03194
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Entry
Pd630_LPD03194 CDS
T03071
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
roa
Rhodococcus opacus PD630
Pathway
roa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Pd630_LPD03194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roa03400
]
Pd630_LPD03194
Enzymes [BR:
roa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Pd630_LPD03194
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Pd630_LPD03194
DNA repair and recombination proteins [BR:
roa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Pd630_LPD03194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
TackOD1
Anti-TRAP
Zn_ribbon_IS1595
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AHK30413
LinkDB
All DBs
Position
3391836..3392714
Genome browser
AA seq
292 aa
AA seq
DB search
MPELPEVEVVRRGLERHIVGASIDSVDILHPRAIRRHLPGAADLAGQLTGERIASADRRG
KYLWLVLEPSTVALVVHLGMSGQMLVQPPELPTEKHLRIRARLDSGLDLRFVDQRTFGGW
ALAPLVDVDGSLVPDSVAHIARDPLDPRFDLTATVKVVRGKHTEIKRALLDQTVVSGIGN
IYADEALWRAQIHGNRLTDRLSGPKIREVLTAAQEVMREALTQGGTSFDALYVNVNGESG
YFDRSLSAYGQEDRPCPRCGTAIRREKFMNRSSFSCPKCQPAPRRSPAKSSV
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgaactacccgaagtcgaggtggtccggcgcggactcgaacgccacatcgtgggg
gcgtcgatcgattccgtcgacatcctgcatccgcgggcgatccggcgtcatctgcccggc
gccgccgacctcgccggacagctcaccggcgaacgcatcgcgagcgccgaccgtcgtgga
aagtatctgtggctggtcctcgaacccagcaccgtcgctctcgtggtgcatctgggcatg
agtggtcaaatgctcgtgcagccaccggaattgccgaccgagaagcatctgcgcatccgg
gcccggctcgattccggtctcgacctccggttcgtcgaccagcggacgttcgggggctgg
gcgctggcacctctcgtcgacgtcgacggatcgctcgtgccggactcggtggcgcacatc
gcccgtgatccactggatccgcggttcgacctcacggcgaccgtgaaggtcgtgcgcggc
aagcacaccgagatcaagcgtgcgcttctggaccagaccgtcgtctccggcatcggcaac
atctacgcggacgaggcgctgtggcgcgcccagatccacgggaatcggctcaccgacagg
ctgagtggtcccaagatccgtgaagtgctcacggccgcgcaggaggtcatgcgtgaggcg
ctcacccagggcggcacgtccttcgacgctctctacgtgaacgtcaacggcgagtcgggc
tatttcgaccgttcgctgtccgcctacggtcaggaggatcgcccgtgcccgcggtgcggc
accgcgatccggcgggagaaattcatgaaccgctcgtcgttcagttgcccgaagtgccag
ccggcaccacggagaagcccggcgaaatcgtctgtgtga
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