Rhodococcus opacus PD630: Pd630_LPD03479
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Entry
Pd630_LPD03479 CDS
T03071
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
roa
Rhodococcus opacus PD630
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
roa03016
]
Pd630_LPD03479
Enzymes [BR:
roa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Pd630_LPD03479
Transfer RNA biogenesis [BR:
roa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Pd630_LPD03479
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AHK30698
LinkDB
All DBs
Position
complement(3679978..3681267)
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AA seq
429 aa
AA seq
DB search
MSEVTDDASSPGPAEEPGRQIVPLLAPRDGVPDVVTTAEGVAKAAAALSEGTGPLAVDAE
RASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAPLAEVINPLEWILHSADQDLPGLA
EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAADWSKRPLPDSWLNYA
ALDVEVLVELRNVMAAELDEQGKSGWAAQEFEHIRLAGPPKPKADRWRRTSHITSLKTQR
QLAAARSLWQAREDLARKRDVSPSRVLPDSAIIDAATKDPRSIEALRALPVFGGPRQRRH
SRIWLQALEDARALPDTALPPKTPPFTGPPPASRWARHDPEAAERLTAARAALAALGAEV
SVPVENLVTPELVRRLCWDWSAPEDGEVETAIDRVLDAGGARPWQRTLTVPALASALLSA
AEQKGSGGT
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagtcaccgacgacgcctcgtcacccggccccgccgaagagcccggccggcag
atcgttcccctgctcgcaccccgggacggcgtgcccgacgtcgtgaccacggcggagggt
gtcgcgaaggccgcggccgcgctgagcgagggcaccgggccgctggcggtcgacgccgag
cgggcgtccggcttccgctattcggcgcgggcgtatctcgtgcagctgcgccgggagggt
gcgggcacggtgctcctcgacccgatccccaccgccgccgatctcgccccgctggcggag
gtgatcaatccgctggagtggatcctgcactccgccgaccaggatctgccggggctcgcg
gagatcggtctggcgccggcgaccctgttcgacaccgaactggcggggcgcctcgccggg
ttcgaacgggtcggtctcgccgcgatcgtcgagcggacgctgggcctcgaactccggaag
ggccacggcgccgccgactggtcgaagcggccgctgcccgattcctggctgaactacgca
gccctcgacgtcgaggttctggtcgagttgcggaacgtgatggccgcggaactcgacgag
cagggcaagagcgggtgggctgcacaggagttcgagcacatccggctcgcggggccaccg
aagcccaaggccgaccgctggcggcggacgtcgcacatcacgtcgctgaagacgcagcgg
caactcgccgcggcacgctccctgtggcaggcccgcgaggacctcgcccgcaaacgggac
gtctcccccagccgggtcctgccggattcggcgatcatcgacgcggcgaccaaggacccc
cggagcatcgaggcgctccgggcgctgcccgtgttcggcggtccccgccagcggcggcac
tcccggatctggctgcaggcgctcgaggatgcccgggcactgccggacaccgcacttcct
ccgaagaccccgccgttcacgggaccgccgccggcgagccggtgggcgcgacacgacccc
gaggccgccgaacggctgacggctgcccgcgccgcgctggccgccctcggcgcggaggtg
tcggtgccggtggagaacctggtgaccccggaactcgtccgcaggttgtgctgggactgg
tcggcccccgaggacggcgaggtcgagacggcgatcgaccgggtgctcgacgcgggcggt
gcccgcccctggcagcggacgctgaccgtgcccgcgctggcgagcgcactgctctccgcc
gccgagcagaagggctccggcggcacctga
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