Rhodococcus opacus PD630: Pd630_LPD03502
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Entry
Pd630_LPD03502 CDS
T03071
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
roa
Rhodococcus opacus PD630
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
roa03016
]
Pd630_LPD03502
Enzymes [BR:
roa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pd630_LPD03502
Transfer RNA biogenesis [BR:
roa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pd630_LPD03502
Prokaryotic type
tRNA splicing ligases
Pd630_LPD03502
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
AHK30715
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All DBs
Position
3699805..3701010
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AA seq
401 aa
AA seq
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MFPVRLEGTTAPTLMWAEEWTIEQAALQQLRNMADLPWVHGVRVMPDVHVGKGATVGSVI
AMREAIAPAAVGVDIGCGMTAVRTDVTASDLPDSLRSMRSRIERAVPVGFAMHERSVNVG
ALDVTDAGGVKRGWHRFWQDFGDLHSGVQSRESKAMKQIGTLGGGNHFIEVCLSDADEVW
LMLHSGSRNIGKELAERHIAVARALPHNQRLVDRDLAVFLAGSKEMDAYRHDLTWAQEYA
ARNRAVMLTLVMQAFRQSLPGRTVRFDEPISCHHNYVSEEIIDGEPMLVTRKGAIRAGRG
DLGLIPGSMGTGSYVVRGLGSELSFNSASHGAGRTMSRTKAKKRFTVDDLVRQTSGVESR
KDAGVIDEIPGAYKDIEQVIEAQADLVEVVAHLRQVVCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgttccccgtgaggctggaaggcaccaccgcgcccaccttgatgtgggcggaagagtgg
accatcgagcaggctgcgttgcagcagctgcggaacatggccgacctgccgtgggtccac
ggggtgcgggtcatgcccgacgtccatgtcggcaagggtgcgacggtcggttccgtcatc
gcgatgcgggaggcgatcgccccggcggcggtcggcgtcgacatcgggtgcggaatgacg
gcggtccggacggatgtgaccgcgagcgatctgcccgacagcctgcggtcgatgcggtcg
cgcatcgagcgtgcggtgccggtcgggttcgccatgcacgagcgttcggtgaacgtcggc
gccctcgatgtcacggacgccgggggagtgaagaggggatggcaccgcttctggcaggac
ttcggtgacctgcattccggcgtccagtcccgcgaatccaaggcgatgaaacagatcggc
acgctcggcggtggcaaccacttcatcgaggtgtgcttgtccgacgcagacgaagtctgg
ctgatgctccactccgggtcgcgcaacatcggcaaggaactggcggagcggcacatcgcg
gtggcgcgggcgttgccgcacaaccagcgcctcgtcgatcgcgatctcgcggtgttcctc
gccggcagcaaggagatggacgcataccgccacgacctgacgtgggcgcaggagtacgcg
gcccgcaaccgcgccgtcatgctcaccctggtgatgcaggcgttccggcagtcactgccc
ggtaggacggtgcggttcgacgagccgatctcctgccaccacaactacgtgtcggaggag
atcatcgacggcgagcccatgctcgtcacccgtaagggcgcgatccgcgccggccggggt
gatctcggactcatccccggctccatgggcaccggttcctacgtggtgcgaggcctgggc
tccgagctgtccttcaattcggcgtcacacggggcgggacggacgatgagccgcacgaag
gcgaagaagcgtttcaccgtcgacgacctcgtgcggcagacgtccggagtcgaatcacgc
aaggacgcgggcgtgatcgacgagatccccggcgcctacaaggacatcgagcaggtgatc
gaagcgcaggccgatctcgtcgaggtcgtggcccacctgcggcaggtcgtctgtgtgaag
ggatga
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