KEGG   Rhodococcus opacus PD630: Pd630_LPD04103
Entry
Pd630_LPD04103    CDS       T03071                                 
Name
(GenBank) RNA polymerase sigma-F factor
  KO
K03090  RNA polymerase sigma-B factor
Organism
roa  Rhodococcus opacus PD630
Brite
KEGG Orthology (KO) [BR:roa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:roa03021]
    Pd630_LPD04103
Transcription machinery [BR:roa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Pd630_LPD04103
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r3 Sigma70_r4 Sigma70_r4_2 HTH_23 HTH_24 Sigma70_ECF DUF7343 HTH_3 MarR HTH_Tnp_ISL3 MarR_2 HTH_Crp_2 HTH_AsnC-type LacI HNH_repeat Packaging_FI HTH_7 KORA
Other DBs
NCBI-ProteinID: AHK31316
LinkDB
Position
complement(4295047..4295844)
AA seq 265 aa
MSPIPERSERHRPGRDDYKDVAPAVARLRALDESSGEASALRDEVITRCLPLADHIARRF
GGRGEAHEDLLQVARLGLVKAVDRFDPDRGFDFVSYAVPTIMGEVRRYFRDTGWSMRVPR
RMQELHALITKAVDELSQELGRSPSASEIAAELELDVREVSEGLLAKNAYQTLSMDAAMG
DDPDDLPLAETLGEEDPELANVESHAAVRPALEKLPPLERRVLMLRFFGSMTQTEIAQRV
GVSQMQVSRILARTLSGLREQLGGG
NT seq 798 nt   +upstreamnt  +downstreamnt
gtgtcgccgattccggaacgcagcgagcggcaccgtcccggcagagacgactacaaggac
gtggcgcccgcggttgcgcgcctgcgagccctggacgaatcgtccggggaggcgtccgcg
ctgcgcgacgaagtcatcacacgttgccttcccctcgccgatcacatcgcccgccgattc
ggtgggcgcggcgaggcgcacgaggatctgctgcaggtcgcccgactcggcctggtcaag
gccgtcgaccgtttcgatccggaccgcggcttcgacttcgtgtcctacgcggtgcccacg
atcatgggggaggttcgccggtacttccgcgacaccggctggtcgatgcgggtgccccgg
cgcatgcaggaactccacgcgttgatcaccaaggccgtcgacgagctgtcgcaggaactg
ggacggtcaccctcggccagtgagatcgccgccgaactcgaactcgacgtccgggaagtg
tccgagggcctgctcgcgaagaatgcctaccaaaccttgtcgatggatgcggccatgggt
gacgatcccgacgaccttcccctcgccgagactctcggcgaggaggacccggagctcgcg
aacgtggaaagtcacgccgccgtgcggccggcgttggagaaacttccgccgctcgaacgc
cgcgtgctgatgttgcggttcttcggctcgatgacccagacggaaatcgcccagcgggtg
ggcgtctcgcagatgcaggtctcgaggatcctggcgcgcaccctgtccgggctgcgggag
cagctgggcggcggctga

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