Rhodococcus opacus PD630: Pd630_LPD04210
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Entry
Pd630_LPD04210 CDS
T03071
Name
(GenBank) RNA polymerase sigma-E factor
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
roa
Rhodococcus opacus PD630
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
roa03021
]
Pd630_LPD04210
Transcription machinery [BR:
roa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pd630_LPD04210
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
SnoaL_2
SnoaL_4
Sigma70_r4
Sigma70_ECF
HTH_23
UPF0122
SnoaL_3
DUF4440
Terminase_5
NTF2
Motif
Other DBs
NCBI-ProteinID:
AHK31423
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Position
complement(4440411..4441460)
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AA seq
349 aa
AA seq
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MTDMSARTPDAAAEAEDADLARARHGDDAAFTRLVGPLRRELHAHCYRMLGSSHDADDAL
QDALLRAWRGFARFEGRSTLRSWLYTVATRTCLDAVESRGKRALPVDLGPSSDRAVIGDV
PVTDVAWLGPYADAGLAAGSAGPAAHYEQREAVELAFVAALQHLPGNQRAALLLFEVLGF
SAAEIADTMDTSRASVNSALQRARAVVAEKIPPVTQAHTLREIGDTRLRALVAGYSTALE
RGDTDALVALLTEDVTWSMPPMAHWYRGLDAVTDFAVRVPLTGCGSWRHLPVGANGQPAV
AFYLWDEDAGTHLRWSITVLTLRGTKIADLTSFLGPEHFEPFGLPESLP
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacatgtccgcacgaacacccgacgcggcggcagaagccgaggatgccgacctg
gccagggcgcgccacggagacgatgccgcgttcacccgcctggtcggaccgttgcgccga
gaactgcacgcccattgctaccgcatgctcggatccagtcacgacgccgacgacgctttg
caggatgcgttgttgcgggcgtggcgcggttttgctcggttcgaaggtcgcagcacgctg
cgctcctggctctacaccgtcgcgacgcgcacgtgcctggacgccgtcgaatcgcgcggt
aagcgggccctgcccgtcgacctgggcccgtccagtgatcgtgccgtcatcggtgacgtc
cccgtcacggacgtggcctggctggggccctacgccgacgcgggtctggccgccggttcg
gcggggccggccgcacactacgagcaacgcgaggctgtcgaattggcgttcgttgcggca
ctgcaacatctgcccggtaatcagcgggcggccctgcttctcttcgaagtcctcggtttc
tccgccgccgagatcgccgacaccatggacacgtcgagggcgtcggtgaacagcgcgctg
cagcgggcacgcgcggtcgtcgccgagaagattccgccggtgacgcaggcgcacactttg
cgggagatcggcgacacgcgtctgcgtgccctcgtcgccgggtactccactgctttggaa
cgaggtgacacagatgccctggttgccctgctgacggaagatgtcacctggtcgatgccg
ccgatggcgcactggtaccgcggtctcgacgcggtcaccgatttcgcggtccgggtcccg
ctcacggggtgcggttcgtggcgtcacctcccggtcggagcgaacgggcagcccgccgtc
gccttctacctgtgggacgaagacgccggcacccacctgcgctggtcgatcaccgtgctg
accctgcgcggcaccaagatcgcggacctgacctcgttcctcgggccggaacacttcgag
ccgttcgggttgcccgaatcgctgccctga
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