Rhodococcus opacus PD630: Pd630_LPD04987
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Entry
Pd630_LPD04987 CDS
T03071
Name
(GenBank) glycine dehydrogenase
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
roa
Rhodococcus opacus PD630
Pathway
roa00260
Glycine, serine and threonine metabolism
roa00630
Glyoxylate and dicarboxylate metabolism
roa00785
Lipoic acid metabolism
roa01100
Metabolic pathways
roa01110
Biosynthesis of secondary metabolites
roa01200
Carbon metabolism
Module
roa_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
Pd630_LPD04987
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
Pd630_LPD04987
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
Pd630_LPD04987
Enzymes [BR:
roa01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
Pd630_LPD04987
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Gene cluster
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Motif
Pfam:
GDC-P
GcvP2_C
Aminotran_5
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
AHK32199
LinkDB
All DBs
Position
complement(5169956..5172808)
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AA seq
950 aa
AA seq
DB search
MIDAGSRTFADRHVGPNAAELAHILELVGADSLDDLASKAVPAVILDGVTGGIADGLDSL
PAPVSEHEALAELSALAAQNTVATSMIGLGYYDTLTPPVLIRNIIENPAWYTAYTPYQPE
ISQGRLEALLNFQTMVADLTGMEVANSSMLDEATAAAEAMTLLRRASKSKSPRFVVDADL
FPQTLAVVETRAEPLGIEIVVADLSAGLPDGDFFGVLAQMPGGSGRIVDYTDVIAAAHER
GALVAVGADLLALTLLTPPGEIGADACFGTTQRFGVPMGFGGPHAGYLAVHTKHARQLPG
RLVGVSVDADGDKAYRLALQTREQHIRREKATSNICTAQVLLAILAAMYASYHGAEGLKA
IALRVANTAHSLAAALRKTGAVVVHEHFFDTILVRVDGRAADVVAKAKDAGINLRLVDAD
HVAIACDEATTDDDVAHVLAAFGGEGAVTEEAGTSVPDSQLRGSDYLQHEAFTRYRTETA
MLRYLRALSDKDIALDRSMIPLGSCTMKLNATAEMEAITWPAFAGLHPFAPTGDTPGILR
IIKDLENWLVAVTGYDAVSLQPNAGSQGEYAGLLAIRNYHLSRGDDHRDTCLIPSSAHGT
NAASAVMAGMRVEVVACRPNGDVDLDDLRAKIADHAERLAAIMITYPSTHGVYEHEIADI
CAAVHDAGGQVYVDGANLNALVGLARPGRFGGDVSHLNLHKTFCIPHGGGGPGVGPIGVR
SHLTPFLPGHPLAPELGTAGPISAAPYGSASILPITWAYIRMMGAVGLRRASLTAIASAN
YIARRLDEYFPVLYTGEGGMVAHECILDLRPITKDTGVTVDDVAKRLADYGFHAPTMSFP
VGGTLMVEPTESENLEEIDAFCEAMIAIRAEIDRVGAGEWPVDDNPLRGAPHTAGCLVAE
WNHPYTRETAVFPRGKARPKVWPAVRRIDGAHGDRNLVCSCPPISAFEGA
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgctggaagccgtacattcgccgatcgtcatgtcggcccgaacgctgcggaa
ctcgcgcacatcctcgagctggtcggagccgattcgctcgacgacctcgcgtcgaaggct
gtccccgccgtcatcctggacggggtcacgggcggcatcgccgacggcctcgactcactg
cccgcaccggtgtccgagcacgaagcgctcgcggaactgtccgcactcgccgcgcagaac
accgtggcgacgtccatgatcggtctcggctactacgacaccctcaccccgccggtcctg
atccggaacatcatcgagaacccggcctggtacacggcctacaccccgtaccagcccgag
atcagccagggccgactcgaagccctcctcaacttccagacgatggtcgccgacctgacc
ggcatggaggtcgccaactcgtcgatgctcgacgaggccaccgccgccgccgaggcgatg
acactgctgcgccgggcgagcaagagcaagtccccgcggttcgtcgtcgatgccgacctg
ttcccgcagacgctggccgtcgtcgagacccgggccgagccgctcgggatcgagatcgtg
gtggccgacctgtccgccggcctgccggacggtgacttcttcggcgtcctcgcgcagatg
cccggcgggtccggccgcatcgtcgactacaccgacgtgatcgccgccgcccacgagcgc
ggcgcactggtcgcggtcggggcggatctgctggcgctcaccctcctcaccccgcccggc
gagatcggggccgacgcctgcttcggcaccacccagcggttcggtgtccccatgggcttc
ggtggcccgcacgccggctacctcgccgtgcacaccaagcacgcacgtcaactccccggc
cgtctggtgggcgtctccgtcgatgccgacggtgacaaggcgtaccggctggcgctgcag
acccgggagcagcacattcgccgcgagaaggcgacgtcgaacatctgcaccgcacaggtg
ctgctggcgattctggcggccatgtacgccagctaccacggcgccgagggcctgaaggcg
atcgccctgcgcgtcgcgaacacggcgcactccctggctgccgcgctccgcaagaccggg
gcggtcgtcgtccacgagcacttcttcgacacgattctcgtgcgagtcgacggccgggca
gcggacgtggtggcgaaggcgaaggacgccggcatcaacctgcggctcgtcgacgccgat
cacgtcgccatcgcgtgcgacgaagccaccaccgacgacgacgtcgcccacgtgctcgcg
gcgttcggcggcgaaggcgccgtgaccgaggaagcgggcacgtccgtccccgactcgcag
ctccgcggatccgactacctgcagcacgaggcgttcacccggtaccgcaccgagacggcg
atgctgcgctacctgcgggcgttgtccgacaaggacatcgcactcgaccgcagcatgatc
ccgctcggttcctgcacgatgaagctcaatgccaccgccgagatggaagcgatcacctgg
cccgcgttcgccggactgcacccgttcgcgccgacaggggacaccccgggaatcctccgc
atcatcaaggacctcgagaactggctcgtcgccgtcaccggctacgacgcggtcagcctg
cagccgaatgccggtagccagggcgagtacgcagggctgctcgcgatccgcaactaccac
ctcagccgcggagacgaccaccgcgacacctgcctcatcccgtcgagcgcccacggcacc
aacgccgcatccgcggtcatggccgggatgcgcgtcgaggtcgtcgcgtgccgcccgaac
ggtgacgtggacctggacgacctgcgggcgaagatcgccgaccatgccgagcgcctcgcg
gcgatcatgatcacctacccgtccacacacggtgtgtacgagcacgagatcgccgacatc
tgcgccgccgtccacgacgccggtggacaggtgtacgtcgacggcgccaacctcaacgcc
ctggtcggcctggcccgccccggccggttcggcggcgacgtgagccacctcaacctgcac
aagacgttctgcatcccgcacggcggcggtggccccggtgtcggtccgatcggtgtgcgg
tcccacctcacgccgttcctgcccggacatccgctcgcacccgaactcggcactgccgga
ccgatctcggcggccccttacggcagtgcgtcgatcctgccgatcacctgggcgtacatc
cggatgatgggtgccgtcgggctgcgtcgcgcaagcctgaccgccatcgcgtcggccaat
tacatcgcgcgccgcctggacgagtacttccccgtcctctataccggcgagggcggaatg
gtggcccacgagtgcatcctcgacctccggccgatcaccaaggacaccggtgtgaccgtg
gacgacgtagcaaagcgcctcgccgactacggtttccacgcaccgacgatgagcttcccg
gtggggggcaccctgatggtggagcccaccgagagcgagaacctcgaagagatcgacgcc
ttctgcgaggcgatgatcgcgatccgcgccgagatcgaccgcgtgggtgcgggggagtgg
ccggtggacgacaacccgttgcgcggtgccccgcacacggccggttgcctggtagcggaa
tggaaccacccctacacccgtgagacggcggtgttcccccgcggcaaggcacggccgaag
gtgtggccggcggtccggcgcatcgacggcgcgcacggcgaccgcaacctcgtgtgctcc
tgcccgccgatctccgcgttcgaaggcgcctga
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