Rhodococcus opacus PD630: Pd630_LPD05078
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Entry
Pd630_LPD05078 CDS
T03071
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
roa
Rhodococcus opacus PD630
Pathway
roa03030
DNA replication
roa03410
Base excision repair
roa03420
Nucleotide excision repair
roa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pd630_LPD05078
03410 Base excision repair
Pd630_LPD05078
03420 Nucleotide excision repair
Pd630_LPD05078
03440 Homologous recombination
Pd630_LPD05078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
roa03032
]
Pd630_LPD05078
03400 DNA repair and recombination proteins [BR:
roa03400
]
Pd630_LPD05078
Enzymes [BR:
roa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pd630_LPD05078
DNA replication proteins [BR:
roa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pd630_LPD05078
DNA repair and recombination proteins [BR:
roa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Pd630_LPD05078
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pd630_LPD05078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
HHH_5
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
AHK32287
LinkDB
All DBs
Position
complement(5262856..5265519)
Genome browser
AA seq
887 aa
AA seq
DB search
MLLDGHSLAFRAFYALPAENFKTHSGQVTNAVYGFTSMLINLLRDEQPSHVAAAFDVSRQ
TFRAEKFPEYKANRSKAPDEFKGQVEITKDVLGALGIPVMAEEGFEADDIIATLTTQAEA
LGYRVLVVTGDRDSLQLVTDGVTVLYPKKGVSDLTRFTPAAVEEKYGLTPAQYPDFAALR
GDPSDNLPGIPGVGEKTATKWIKEYGDLVGLVDNVDKVRGKVGDALRENLPNVLLNRELT
EMVRDVPLPYTPDQLMLAQWDREKIHALFDDLEFKVLRDRLFATLAPVEAEAEEGFEVRG
SALDPGAVADWLSAHASTGERSGVSVVGTRTPYGGDVTAIAIAAADGEGAYVATASATPE
DEKALGNWLADADQPKALHEAKWAMHALRGRGWVLGGLTSDTALAAYLVRPGQRTFNLDD
LSLRYLRRELRVEETGQEQLSLLDDADQVDAEAAETEILSARAVLDLAAALDTELANIES
TALLSEMELPLLEVLADIEASGIAVDGDHLHDLQSRFAAEVSAAAEAAYGVIGKQINLGS
PKQLQVVLFDELEMPKTKKTKTGYTTDAEALQNLFEKTSHPFLEHLLAHRDATRLKVTVD
GLLKTVAEDGRIHTTFNQTVAATGRLSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYDSLL
TADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSY
GLAYGLSAFGLAAQLKISTEEAKSQMEAYFARFGGVRDYLHEVVERARKDGYTSTLYGRR
RYLPDLTSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQRSLREAGLKSRMLLQVHD
ELVLEVVDSEREQVEQLVRDKMSSAIELSVPLDVSVGTGRSWDAAAH
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgctgctcgacggccactcgctggccttccgcgcgttctacgccctgcccgccgagaac
ttcaagacgcacagcggtcaggtcaccaacgccgtctacgggttcacgtcgatgttgatc
aacctgctgcgcgacgaacagccgagccacgtggcggcggcgttcgacgtgtccaggcag
acgttccgggcggagaagttccccgagtacaaggcgaatcgcagcaaggctccggacgag
ttcaaggggcaggtcgagatcaccaaggacgtactcggggccctcggcatcccggtgatg
gccgaggaaggcttcgaggccgacgacatcatcgccacgctcaccacccaggccgaggcg
ctcgggtaccgcgtcctcgtggtgaccggcgaccgggactcgctccagctggtcaccgac
ggggtcacggtgctctacccgaagaagggcgtctcggacctcacccggttcacgcccgcg
gccgtcgaggagaagtacgggctcacacctgcgcagtaccccgacttcgcggcactgcgc
ggcgacccgagcgacaacctgccgggcatcccgggtgtcggggagaagaccgccaccaag
tggatcaaggagtacggcgatctcgtcggcctggtcgacaacgtcgacaaggttcgcggc
aaggtcggtgacgcactgcgggagaacctgccgaacgtcctgctcaaccgcgaactgacc
gaaatggtgcgcgacgtcccgctgccgtacaccccggaccagctgatgctcgcgcagtgg
gatcgggagaagattcacgcgctgttcgacgacctcgagttcaaggtgctgcgcgaccgg
ctgttcgccacgttggccccggtcgaagcggaggccgaggaggggttcgaggtgcgcggg
agcgcgctcgatcccggggccgtcgcggactggctgtcggcgcacgcgtcgacgggcgag
cgatccggcgtgtcggtggtcggcacccgcaccccgtacggcggtgacgtgacggcgatc
gccatcgccgccgccgacggcgagggcgcctacgtcgccaccgcttccgccaccccggag
gacgagaaggcgctcggcaactggctcgccgacgcggatcagccgaaggccctgcacgag
gcaaagtgggcgatgcacgcgctgcgcggacgcggctgggtgctcggtggtctcaccagc
gacaccgcgctggcggcctacctggtgcggcccgggcagcggacgttcaacctcgacgac
ctgtcgctgcggtacctgcgcagggagctgcgggtggaggagaccggccaggagcagctg
tcgctgctcgacgacgccgaccaggtcgacgcggaagccgccgagaccgaaattctcagc
gcccgcgccgtcctcgacctcgcggccgcgctcgacaccgaactcgcgaacatcgaatcg
acggcgctgctgtccgagatggagttgccgctgctcgaggtgctggccgacatcgaggcg
tccggtatcgccgtcgacggtgaccacctgcacgacctgcagagccggttcgcggccgag
gtctccgcggcggcggaggcggcctacggggtcatcggcaagcagatcaacctcgggtcg
cccaaacagctgcaggtcgtgctgttcgacgagctggagatgcccaagacgaagaagacg
aagaccggttacaccacggacgccgaggcgttgcagaacctgttcgagaagacgtcgcac
ccgttcctcgagcacctgctcgcgcaccgcgacgcgacgcggctgaaggtgaccgtcgac
gggctgctgaagacggtcgccgaggacggccgtatccacacgacgttcaaccagaccgtc
gcggccaccggccggctgtcgtcgacagagcccaacctccagaacatcccggtccgcacc
gacgccggcaggcagatccgggacggtttcgtcgtcggcgagggctacgactcgctgctc
acggccgactacagccagatcgagatgcggatcatggcccacgtgtccggtgacgagggg
ctgatcgaggcgttcaacaccggcgaagacctgcacagcttcgtcggcgcgcgtgcgttc
ggcgtgccgatcgaggaggtcaccccggagctgcgccgccgcgtgaaggcgatgtcctac
gggctggcgtacgggctgagcgcgttcggtctggccgcccagctcaagatctcgaccgaa
gaggccaaatcgcagatggaggcgtacttcgcgcggttcggcggggtacgcgactacctg
cacgaggtcgtggaacgggcccgcaaggacggctacacgtcgacgctgtacgggcgtcgc
cgctacctgcccgacctcaccagcgacaaccgccagcgtcgggaggtcgccgagcgggcc
gcgctcaacgcccccatccagggcacggccgccgacatcatcaaggtcgcgatgatcaac
gtgcagcggtcgctgcgcgaggcgggcctgaagtcgcggatgctgctgcaggtccacgac
gaactcgtgctcgaggtcgtcgattcggaacgggaacaggtcgaacagctggtccgcgac
aagatgtcctcggccatcgagctgtcggtgccgctcgacgtgtccgtcggcaccggtcgc
agttgggacgccgccgcacactag
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