Rhodococcus opacus PD630: Pd630_LPD05614
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Entry
Pd630_LPD05614 CDS
T03071
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
roa
Rhodococcus opacus PD630
Pathway
roa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pd630_LPD05614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
roa03021
]
Pd630_LPD05614
03019 Messenger RNA biogenesis [BR:
roa03019
]
Pd630_LPD05614
Transcription machinery [BR:
roa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Pd630_LPD05614
Messenger RNA biogenesis [BR:
roa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pd630_LPD05614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
Motif
Other DBs
NCBI-ProteinID:
AHK32808
LinkDB
All DBs
Position
complement(5793374..5795461)
Genome browser
AA seq
695 aa
AA seq
DB search
MTDTDLIAAPVRASSVDTVGAQAGDSSQASSTAPGTGAVTASTKRAEARRGAGLSGMVLT
ELRTLAGELGIKGMSGMRKGDLIAAIKERQGGSSAPAAAATEAAPRTRATRAKREQSAQT
ELEVTPQAETTEKAAEPKTAEPATGDGAAADTDTAEGGRRGRQRRGSARRAGAPEQGDQG
GNAQDATASANATDTQQAERKQADDRQDSAEKPAKQDGSGEQGGDRNRRERGGDRGDRGD
TRGDRGERGDRGDRDNRGDRSQGNNGPRNNDNRPGDDEEGGRGRRGRRFRERRRGRDRGE
GGGGDARETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRG
DAITGAVRVGREGEQGNQRQKFNPLVRIDTVNGGDVEAAKKRPEFGKLTPLYPNQRLRLE
TTPNILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAIATNNPECYLMVVLVDE
RPEEVTDMQRSVKGEVISSTFDRPPGDHTSVAELAIERAKRLVEAGKDVVVLLDSITRLG
RAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVI
FEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSGLD
SHQAIDLLIDRLKKSKSNIEFLMQVSKTAPGAIDD
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggacctcatcgccgctcctgtgcgcgcctcctcggtggataccgttggc
gcgcaggcaggcgactcttcacaggcgtcatcgaccgcacccggcaccggtgccgtgaca
gcctccaccaagcgcgccgaggcgcgccggggtgccgggctgtccggaatggtgctcacc
gagctccgcactctcgcaggtgagctgggcatcaagggcatgtcggggatgcgcaagggc
gacctgatcgccgcgatcaaggagcgtcagggcggctcttccgccccggccgctgccgcg
accgaagccgctccccggacccgggcgacccgcgcgaagcgcgaacagtccgctcagacc
gaactcgaagtgactccccaggcggagaccaccgagaaggccgccgagcccaagacggcc
gaacccgcgacaggcgacggcgcagccgccgacaccgacaccgccgaaggcggccgtcgc
gggcgtcagcgtcgcggatccgcgcgtcgggcaggcgcacccgagcagggtgaccagggc
ggcaacgctcaggacgccaccgcctcggcgaatgccaccgacacgcagcaggccgagcgc
aagcaggccgacgaccgtcaggattcggccgagaagccggccaagcaggacggctccggc
gaacagggcggcgaccgcaaccgacgcgagcggggcggcgaccgcggtgatcgtggtgac
acccgcggtgaccgcggcgaacgcggtgaccggggcgatcgcgacaaccgcggcgaccgc
agccagggcaacaacggcccgcgcaacaatgacaaccgcccgggcgacgacgaggaaggc
ggtcgcggacgccgcggacgtcgcttccgcgaacgtcgtcgtggacgcgaccgcggcgaa
ggcggcggcggcgacgcccgcgagaccgagatccgcgaggacgacgtcctgcagccggtc
gccggcatcctggacgtcctcgacaactacgcgttcgtgcggacctccggctacctggcc
ggaccgaacgacgtctacgtgtcgatgaacctgatccgcaagaacggcctccgccgcggc
gacgccatcaccggcgccgtccgggtcggacgcgaaggcgagcagggcaaccagcgccag
aagttcaacccgttggtccgcatcgacaccgtcaacggtggcgacgtggaagcggccaag
aagcgccccgagttcggcaagctcaccccgctgtacccgaatcagcggctgcgtctggag
acgacgccgaacatcttgacgacccgtgtcatcgacctggtgatgccgatcggcaaggga
cagcgtgcgctgatcgtgagcccgccgaaggccggtaagaccagcgttctgcaggccatc
gccaacgccatcgcgaccaacaaccccgagtgctacctcatggtcgtgctggtcgacgag
cgtcccgaagaggtcaccgacatgcagcgttcggtgaagggcgaggtcatctcctcgacc
ttcgaccgcccgccgggagaccacacctcggtcgccgagctggccatcgagcgtgcgaag
cgtctcgtggaggcgggtaaggacgtcgtcgtcctcctcgactcgatcacccgcctcggc
cgtgcgtacaacaactcgtcgcctgcctcgggacgcatcctctccggtggtgtcgactcg
accgcgctctacccgccgaagcgtttcctcggtgctgcgcgcaacatcgagaacggcggt
tcgctcacgatcatcgcgacggccatggtcgagaccggttccaccggcgacaccgtgatc
ttcgaggagttcaagggcaccggtaacgccgagctgaagctcgaccgcaagatcgcggaa
cgtcgtgtgttcccggctgtggacgtgaacccctcgggtacgcgtaaggacgagctgctg
ctcagcccggacgaggccgcggtgctgcacaagctccggcgtgtgctctcgggtctcgac
tcgcaccaggccatcgatctgctgatcgaccgcctcaagaagagcaagagcaacatcgaa
ttcctcatgcaggtgtcgaagactgctccgggcgcgatcgacgactga
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