Rhodococcus opacus PD630: Pd630_LPD06003
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Entry
Pd630_LPD06003 CDS
T03071
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
roa
Rhodococcus opacus PD630
Pathway
roa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Pd630_LPD06003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roa03400
]
Pd630_LPD06003
Enzymes [BR:
roa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Pd630_LPD06003
DNA repair and recombination proteins [BR:
roa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pd630_LPD06003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
PDDEXK_1
DUF6003
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
AHK33194
LinkDB
All DBs
Position
complement(6225065..6228376)
Genome browser
AA seq
1103 aa
AA seq
DB search
MTGARGFDLLGPLPEGTTVLEASAGTGKTYAIVGLAARFVAEGGVDLSQLLLVTFSRAAT
QELRERTRERFGSAAAALADPAAARLSADQLIRHLAEADTDEVTLRRRRLLQALSDFDAA
TIVTTHSFCQRMLDGLGIAGERDPDTVLVEAADDLTTEVIADLYLRAYSRVEAAPFTPAE
ATAAARAAIFDPQAVLAPEDARGTPAGDRVAFAEAVRAEVERRKRAVGLRDFDDLPMLLH
RVLSDPEHGAAACRRVRERYGVVLVDEFQDTDPLQWDILRRTFHGSGTLVLVGDPKQAIY
AFRGAEVLSYLDAVRSADRHQELTTNWRSDQELLDGLEYLHGGAALGHTDIVVHRVDGAR
PKSRLTGTVPLRLRYLPRTGAGPINKSGYPAVGPLRKRIAADLAADIVALLDGGATLDVG
GSIRLVEPGDIAVLVRTNAQITLVHDALDRAGVPSVLAGGASVFTTPAAQHWLWLLQAIE
QPHRSDRVRLAALTPLLGHTAEELDARGDDIVAEVGGQLRELGDVFAQSGFAALFERLSA
VGALEARLLRVAAGERALTDLRHVAQLLNGAAVEQSLGLTAVTRWLTERMKDPSSGGVDR
SRRLDSDAAAVQIATVHASKGLEFPLVYLPYAWDAAKISKPSKLLLHDDDGRRILDVGGP
GSPGYADRRNRHDAEEAGEELRLLYVAVTRAMCGLVVWWAPAFTTAGAPLHRIILGRQPG
QREVPPKVTVPEDPVVAERLSAWGAEAPETVTVEAVGSDPIARVEWTPQREPHGDLEAAR
FRRLLDTRWRRTSYSALTASAHDAPAVGSEAEVEEKTDEPAEPPLQVPADVTAGVPSTMN
ELPGGATFGTLVHAVFEIVDTAAPDLDAEVLRCCRDVIASTLSDIDPAQLATALLPVLRT
PLGAGGEPTLADIAPADLLAELDFELPLAGGDTPSLTVMLDGVGRLLRTHLPVDDPLRSY
ADAVQTLEPTPLRGYLTGSIDVVLRLPGPRYVVVDYKTNRLAQGDLTTAHYTRERMAAEM
LRAHYPLQALLYSVALHRYLRWRQPDYDPAVHLGGVRYLFVRGMVGPGTPPGCGVFDWAP
PAALITELSDLLSGSASEREGTR
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggcgcgcgaggcttcgacctcctcggtccgctgccggaggggacgacggtgctc
gaggcgagcgccggtaccggcaagacgtacgcgatcgtcggtctggccgcccgcttcgtc
gccgaggggggcgtggacctgtcgcagctgttgctggtgacgttcagccgggcggccacg
caggagctgcgggaacgcacccgtgaacgattcggttccgcggcagccgcattggccgat
cccgcagcggcgcggctgagcgcggatcaactgatccggcatctcgccgaagccgacacc
gacgaggtgacgctgcgccgccggcgcctgctgcaggcgctgtcggacttcgacgccgcc
accatcgtcaccacccacagcttctgtcagcgcatgctcgacgggctcggcatcgcgggc
gaacgcgaccccgacacggtgctggtcgaggccgccgacgacctcacgacggaggtgatc
gccgacctgtacctgcgggcctacagtcgggtcgaggccgcgccgttcactccggcggag
gccaccgcggccgcccgggccgccatcttcgacccgcaggcggtgctcgccccggaagat
gcgcggggcaccccggccggggatcgggtggcgttcgccgaggcggtgcgcgccgaagtc
gagcggcgcaaacgtgcggtgggtctgcgtgacttcgacgatctcccgatgctgctccat
cgcgtcctcagcgatcccgagcacggtgcggcggcctgccggcgggtccgcgaacgctac
ggcgtcgtgctcgtcgacgagttccaggacaccgacccgctgcagtgggacattctgcgc
cgaacgttccacggcagcggaacgctggtgctcgtcggcgacccgaagcaggccatctac
gcattccgtggggcggaggtgctcagctacctggacgcggtgcggtcggcggaccgtcac
caggagttgaccaccaactggcgcagcgatcaggaactcctcgacgggctcgaatatctg
cacggcggcgccgcgctcgggcataccgacatcgtggtgcaccgcgtcgacggtgcgaga
ccgaagtcgcgtctgacgggtaccgtgccgctgcggctgcggtatctgccgaggaccggc
gccgggccgatcaacaagtcgggataccccgcggtggggccgctccggaagcggatcgcg
gcagacctcgcggccgacatcgtcgccctcctcgacggtggcgcgacactcgacgtcggg
gggagcatccgactcgtcgaacccggcgacatcgccgtcctggtccgcaccaacgcgcag
atcacgctggtccacgacgccctcgaccgggcgggtgtgccgtccgtgctcgccggcggg
gccagcgtcttcacgactccggctgcgcagcactggctctggcttctgcaggccatcgag
caaccgcaccgttccgaccgggtgcggctggccgcgctcaccccgctgctcggacacacc
gccgaggaactcgacgctcgcggcgacgacatcgtcgccgaggtcggcgggcagctccgc
gagctcggcgacgtgttcgcgcagtccggtttcgcggcgctgttcgaacggctgtccgcg
gtcggcgcgctcgaggcgagactgcttcgggtggcggcgggcgagcgggcactgaccgat
ctccggcacgtcgcgcagttgctcaacggtgccgccgtcgagcagtcgctcggtctgacg
gccgtcacccgctggctcaccgaacggatgaaggatccgtcctcgggtggggtggaccgc
agccgacggctcgacagtgacgccgcagcggtgcagatcgcgaccgtccacgccagcaag
ggcctcgaattcccgctcgtctacctgccgtacgcctgggacgccgcgaagatctcgaaa
ccgagcaaactgctgctgcacgacgacgacgggcgacgcatcctcgatgtcggcggtccg
ggcagccccggttacgcggaccgcaggaaccggcacgacgccgaagaggcgggggaggag
ttgcggctgctgtacgtcgccgtgacccgggcgatgtgcgggctcgtggtgtggtgggca
ccggcgttcacgacggcgggcgcaccgctgcaccgaatcatcctggggcggcagcccggg
cagcgggaggtcccgccgaaggtcaccgtccccgaggatccggttgtcgcggaacggttg
tccgcgtggggtgcggaagctccggagacggtgaccgtcgaggcggtgggttccgacccg
atcgcgcgggtcgagtggacaccacaacgtgagccccacggagacctggaagccgcgcgt
ttccggcggctgctcgacacgcgctggcgtcgcacgtcgtattcggcgttgaccgcgtcc
gcgcacgacgcgcccgcggtgggcagtgaggccgaggtcgaggagaagacggacgaaccg
gccgagcctccgttgcaggtgccggccgacgtcacggcgggggtgccgtcgacgatgaac
gaactgcccggcggcgcgacgttcggcacgctcgtgcacgccgtcttcgagatcgtcgac
accgcggcacccgatctggacgcagaagtcctgcggtgctgccgcgacgtgatcgcgtcg
accctgtcggacatcgaccccgcccagctggcgacggcgctgctgcccgtgctgcggact
cccctcggcgcggggggcgagccgacactcgccgacatcgcacccgcagacctgctggcg
gagctcgacttcgaactgccgctcgccggtggcgacacaccctcgctcaccgtgatgctc
gacggcgtcggcaggctgctgcgcacccaccttcccgtcgacgatccgctgcggtcgtac
gccgatgccgtgcagacactcgaaccgaccccgctgcgcggatacctcaccggcagcatc
gacgtcgtgctgcgattgcccggaccgcggtacgtcgtggtcgactacaagaccaatcgc
ctcgcgcagggcgacctgaccaccgcgcactacacccgcgagaggatggccgccgaaatg
ttgcgggcacactacccgctgcaagcgttgctgtattccgttgcgttgcatcgctatctg
cgctggcggcaaccggactacgatccggcggtgcacctcgggggcgtccggtatctgttc
gttcgcggaatggtcggccccggcaccccacccggctgtggtgtcttcgactgggcgccg
cccgccgcgctgatcaccgagctgtccgatctgctgtccgggtcggcctccgagcgcgag
gggacgcgatga
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