Blautia obeum: CK5_16780
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Entry
CK5_16780 CDS
T02605
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rob
Blautia obeum
Pathway
rob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CK5_16780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rob03021
]
CK5_16780
03019 Messenger RNA biogenesis [BR:
rob03019
]
CK5_16780
Transcription machinery [BR:
rob03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CK5_16780
Messenger RNA biogenesis [BR:
rob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CK5_16780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
Spore_III_AA
S1CSD-TOTE-2
SAP
AAA_14
AAA_22
AAA_24
AAA_25
CSD
NACHT
Motif
Other DBs
NCBI-ProteinID:
CBL23084
UniProt:
D4LQM6
LinkDB
All DBs
Position
1694176..1695609
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AA seq
477 aa
AA seq
DB search
MREKYESLSLATLKDLAKARGLKGISTLRKPELIERMLEEDEKEKASSGSAEAKNTEYRQ
EEPAKEENRVRESRASYDTSERKNYQERTEYTHKNPAETAQLDSGEKANGILEVLPDGYG
FIRCANYLPGENDIYVSPSQIRRFNLKTGDIVQGSIRIKTQGEKFSALLYVNSINGFPPS
EGQRRYNFEDMTPIFPNERLRMERPGGTVAMRIMDLLSPIGKGQRGMIVSPPKAGKTTLL
KDVAKSLLKNNPSMHLIILLIDERPEEVTDIKEEIQGDNVEVIYSTFDELPEHHRRVSEM
VVERARRLVEHKQEVTILLDSITRLARAYNLCVTPSGRTLSGGLDPAALHMPKRFFGAAR
NMREGGSLTILATALVDTGSKMDDVIYEEFKGTGNMELVLDRKLQEKRVFPAIDIQKSGT
RREDLLLTKDEQEVVYNMRRALNSLKAEDAVEQILNMFSRTKNNAEFIQTAKKQKFL
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgagagaaaaatatgaatcgttgtcccttgctacattaaaagatcttgcaaaggcaaga
ggattaaagggaatttctactttgagaaagccggaactgatagagcgcatgctcgaagaa
gacgaaaaagaaaaggcatcttcaggcagtgctgaagctaagaatacagaatacagacag
gaagagcccgccaaagaagaaaaccgtgtccgggaatcgcgtgcttcttatgatacatca
gaaagaaagaattatcaggaacgtacagagtatacccacaaaaatccggcggagacagcc
cagcttgacagtggcgagaaggcaaacggcattctggaagtacttccggatggttatgga
tttatccgctgtgccaattatctgccgggtgagaatgacatttatgtatctccatcccag
atcagacgttttaacttaaagacaggagacatcgtacagggaagtatccgcatcaagacg
cagggtgagaagttcagtgcacttctttatgtaaactctatcaatggtttccctccgagt
gagggtcagaggagatataatttcgaagatatgactccgattttcccgaatgagcgtctg
cgtatggagcgcccgggcggtacagttgcaatgcgtatcatggatctgttaagcccgatc
ggtaagggccagcgaggaatgatcgtatctccgccaaaagcaggtaagactacgctttta
aaagatgttgcgaagtcactccttaaaaacaacccgtccatgcacctgatcattctgctg
atcgatgaacgtccggaggaggttactgatatcaaggaagaaatccagggggataatgtt
gaagttatttattctacatttgatgagcttccggagcatcacagacgtgtttctgagatg
gtagttgagcgtgcgcgccgtctggtagagcataagcaggaagtaacgatccttcttgat
tctatcaccagacttgccagagcatacaatctctgcgtgacaccgagcggaaggactttg
tccggtggtcttgatccggcagcgcttcatatgccgaagagatttttcggtgcagcccgt
aacatgagagaaggcggaagtctgacaatccttgcgacagcacttgtcgataccggaagc
aagatggacgatgttatctacgaggaattcaagggaaccggtaacatggaacttgtactt
gatcgtaaattacaggaaaagagagtttttccggcaatcgatatccagaaatccggaacg
agacgtgaagatctgctcctgacaaaggacgagcaggaggttgtgtacaacatgcgccgt
gcactcaacagcctcaaggcagaagatgcagtagaacagattctgaacatgttttcacgt
accaaaaacaatgctgaatttatacagacggcaaaaaaacagaaatttttataa
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