Romboutsia sp. CE17: HF520_02030
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Entry
HF520_02030 CDS
T06535
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
roc
Romboutsia sp. CE17
Pathway
roc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF520_02030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roc03019
]
HF520_02030
03009 Ribosome biogenesis [BR:
roc03009
]
HF520_02030
Enzymes [BR:
roc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HF520_02030
Messenger RNA biogenesis [BR:
roc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HF520_02030
Ribosome biogenesis [BR:
roc03009
]
Prokaryotic type
rRNA helicases
HF520_02030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
DUF2681
Motif
Other DBs
NCBI-ProteinID:
QJA07796
LinkDB
All DBs
Position
complement(410279..411382)
Genome browser
AA seq
367 aa
AA seq
DB search
MNFKDLGINDDILNILNTNGITTPTPIQEESIIPIKNGKDVIAQAQTGTGKTLAFLLPIF
ESISNDINSTQALILSPTRELAIQITEEANKLNKAKNINILAAYGGKDIGSQINKLKKNI
HLIIATPGRLLDHLDRKTIDLSKIKTFVLDEADQMLLMGFKNEVEAILKNTSKNRQTLCF
SATMNSQVKKLAYRYMIDPIEISIKEKEIALDSIKQEVVETTDRWKQDSLLKVLDEDNPF
MAIIFCRTKRRVDMLEEAMSQKGYNCAKLHSDIQQSKRERIMKSFRNADIQYLIATDVAS
RGLDITGVDNIYNYDIPETAADYVHRIGRTGRAGKGGYTCMFIDPKNMKTLEEIEQTIKF
KIPRREL
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaagacttagggattaatgacgatattttaaatatattaaatacaaacggt
ataactactccaactccaattcaagaagaaagtataatacctataaaaaacggaaaagat
gttatagctcaagctcaaactggaactggaaaaactttagcttttttacttcctatattt
gaaagtatttcaaatgatataaacagtactcaagctcttattctgtctccaactagagaa
cttgctatacaaataactgaagaagctaataaattaaataaagccaagaacataaatata
cttgctgcatatggaggtaaagatattggttctcaaataaataaattaaagaaaaatatt
catttaataattgctacaccaggaagacttttagatcatttagatagaaaaactatagac
ttaagtaaaataaaaacttttgtattagatgaagcagatcaaatgttacttatgggattt
aaaaatgaagttgaagctatattaaaaaatacatctaagaaccgtcagacactatgtttc
tctgctacgatgaattctcaagtgaaaaagttagcttatagatatatgatagatcctatt
gaaatttctattaaggaaaaagaaatagctcttgattctataaaacaagaagttgttgaa
actactgatagatggaagcaagattctttacttaaagttttagatgaagataatcctttt
atggctataatattctgtagaactaagagaagagttgatatgcttgaagaagctatgtct
caaaaaggatacaactgtgctaaattacatagtgatattcaacagtcaaagcgagaaaga
ataatgaagtcttttagaaatgctgatattcaatatctaattgctacagatgttgcctct
agaggtcttgatataacaggagttgacaatatatataattatgatataccagaaactgca
gcagattatgtccatcgtataggtaggactggtagagcaggcaagggtggatatacttgc
atgtttatcgatcctaaaaacatgaaaactcttgaagaaattgagcaaactattaagttt
aaaattccaagaagagaattataa
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