Romboutsia sp. CE17: HF520_03785
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Entry
HF520_03785 CDS
T06535
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
roc
Romboutsia sp. CE17
Pathway
roc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF520_03785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roc03019
]
HF520_03785
03009 Ribosome biogenesis [BR:
roc03009
]
HF520_03785
Enzymes [BR:
roc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HF520_03785
Messenger RNA biogenesis [BR:
roc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HF520_03785
Ribosome biogenesis [BR:
roc03009
]
Prokaryotic type
rRNA helicases
HF520_03785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QJA08119
LinkDB
All DBs
Position
782711..784168
Genome browser
AA seq
485 aa
AA seq
DB search
MNNNFKKYKLDKEILSSLNSLNYNIPTRVQNEVIPILLNKEDIIVKSKTGSGKTASFAIP
ICEKININDNTVQGLIVVPTRELALQVKEEISSIGRLKKIRCIAIFGKQPIKDQISQLKQ
RVHIVVATPGRIIDHIGRKTINIEGLKFFIIDEADKMLNKGFAEDMETILNRLPRECVKG
LFSATIDDNISEVCSKYMTNPKYVDINQDEVNNFKKQIIEKYIKVNEDNRYEVLKKIIYN
ECPNSVVIFANKKDAVRDLHEKMKKDKFLVGQLHGDMSQDKRLFTIKDFKEYKFNILVST
DVASRGIHIDDISLVINYQVPKDKENYIHRIGRTGRYNKFGKAITLVSENEEKYLNEIEE
YTNSKLDEIKELDDQKVKRGKIEFKVKEKELLNTGKEKNKDKKTNLEVTRIYLNAGKKKK
IRVIDIVGALSNIEGINNEDIGVIEVQELCSYVDLLNNKGSKFLKKHREINIKKKLVKVR
KDNKL
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaataataattttaaaaaatataaattagataaagaaatattaagttcattgaatagt
ttaaactataatattcctactagagttcaaaatgaggttattccaattctattaaataaa
gaagatataatagttaagtctaaaactggaagtggaaaaacagctagttttgcgattcca
atttgtgaaaagataaatattaatgataatactgttcaaggattaatagttgttccaact
agagagttggctcttcaggtaaaagaagaaatatcttcaattggaagattaaagaaaata
agatgcattgctatatttgggaagcaacctataaaagatcagatttcacagttaaagcaa
agagtacatatagtagtagccacacctggtagaataatagatcatattggaagaaaaact
ataaatatagaaggactaaagttttttataattgatgaagctgataaaatgttaaataaa
ggttttgctgaagatatggagactatattaaataggctccctagggaatgtgtaaaagga
ttattctcggctactatagatgataatataagtgaagtatgttcaaaatatatgacaaat
cctaaatatgtagatataaatcaagatgaagtaaataattttaaaaaacaaattatagaa
aaatatataaaagtaaatgaagataatagatatgaagtattaaagaaaataatttataat
gaatgtccaaattctgtagttatatttgcaaataaaaaagacgctgttagagatttacat
gaaaaaatgaaaaaagataaatttttagttggacaacttcatggagatatgtctcaagat
aaaagattatttacaataaaagattttaaagaatataagtttaatattttagtaagcaca
gatgttgcatcaagaggaatacatatagatgatatatccttagtaataaattatcaagtt
ccaaaagataaagaaaattatatacatagaatcggtagaactggaagatataataaattt
ggaaaagctataacattggttagtgaaaatgaagaaaaatatttaaatgaaatagaagaa
tatacaaattcaaagctagatgaaataaaagagttagatgatcaaaaagttaaaagagga
aaaattgaatttaaagtaaaagaaaaggaattattaaatacaggaaaagaaaaaaacaaa
gataaaaaaactaatttagaagtgactaggatatatttaaatgcaggtaagaaaaagaaa
ataagagtaatagatatagtaggagctcttagtaatattgaaggtattaataatgaagac
ataggagttatagaagtacaagaactatgctcttatgtagatttattaaataataaagga
agtaaatttttaaaaaagcatagagaaattaatataaagaaaaaattagttaaggttaga
aaagataataaactttga
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