Romboutsia sp. CE17: HF520_08870
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Entry
HF520_08870 CDS
T06535
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
roc
Romboutsia sp. CE17
Pathway
roc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF520_08870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roc03019
]
HF520_08870
03016 Transfer RNA biogenesis [BR:
roc03016
]
HF520_08870
Enzymes [BR:
roc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HF520_08870
Messenger RNA biogenesis [BR:
roc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HF520_08870
Transfer RNA biogenesis [BR:
roc03016
]
Prokaryotic type
tRNA degradation factors
HF520_08870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_2
S1_RRP5
OB_RRP5_4th
KorB
DUF4191
GcvP2_C
Mug135_C
DUF7266
Motif
Other DBs
NCBI-ProteinID:
QJA09051
LinkDB
All DBs
Position
complement(1859631..1861745)
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AA seq
704 aa
AA seq
DB search
MFEHKIFKMDLAGRELSVEIGKIAELAAGSAILRYGETMVMVNVSKSAKPRDGIDFFPLS
VDYEEKLYSVGKIPGGFLKREGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSV
DQDCTPDIVSMIGSSVALSISDIPFNGPTGSVLVGLVDGALVVNPTAEQREKSSLHLVVS
GTKDAIMMVEAGGEEIPESLMLEAILFAHEEIKKIVTFIEEITAQVGKEKMEVELHKVDA
DVEEAVRKFATDKMKEAVRTVEKLERQQKMDEVREETLAHFEEIVDEFGSDIEEVLQSII
KESVRMLITHEAIRPDNRKLDEIRPIWCDNGFIPRAHGSGLFTRGQTQVMTITTLGALGD
VQILDGLDEEENKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALVPVIPSKEEF
PYAIRLVSEVLSSNGSTSQGSVCGSTLSLLDAGVPIKDMVAGIAMGLIKDDDKVAILSDI
QGMEDHLGDMDFKVAGTEHGITAIQMDIKINGIDENILKTALEQARVGRLHILNEMRKTI
DAPKPQLSKYAPKIITMNINPDKIRDVIGPGGKVITKIIDETGVKIDIEQTGEVFIAGID
QDMIDLAQKLINDIVAEAEVGKTYKGKVTRITTFGAFVEILPGKEGLLHISHISHERVAK
VEDVLKVGDEVEVKVTEIDEKGRVNLSRKVLLPKPESTEKKDHK
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaacataaaattttcaaaatggatttggcaggaagagagctttctgttgaaata
ggaaaaatagctgaattagcagctggtagtgctatacttagatacggagaaactatggtt
atggtaaacgtatcaaaatcagcaaaaccaagagatggtatagatttcttcccacttagt
gttgattatgaagaaaaattatattcagttggaaaaataccaggtggatttttaaagagg
gaaggtaagccttcagaaaaggcaatattaacttctagattaatagatagaccgataaga
cctttatttccaaaaggatttagaaatgatgtacaagttgttgctactgtactttcagta
gatcaagattgtactcctgatatagtatctatgataggttcttcagtagcgttatctata
tcagatataccattcaatggacctacaggatctgttttagtaggacttgttgatggagct
ttagttgtaaatccaactgcagaacaaagagaaaaaagttctcttcatttagttgtatcg
ggaactaaagatgcaataatgatggttgaagctggtggagaagaaatacctgaaagctta
atgttagaggctatattatttgctcatgaagaaataaagaaaatagtaactttcatagaa
gaaataactgcacaagttggaaaagaaaagatggaagttgaattacataaggtagatgct
gatgtagaagaagctgttcgtaaatttgcaactgataaaatgaaagaggcagtaagaact
gttgaaaagcttgaaagacaacaaaaaatggatgaagtaagagaagaaactcttgctcat
tttgaagaaatagttgatgagttcggttctgatattgaagaagttcttcaatctataata
aaggaatctgttagaatgcttataactcatgaagcgataagaccagataatagaaaatta
gatgaaataagaccaatatggtgtgataatggatttataccaagagctcatggatctggt
ttatttacaagaggtcaaactcaagtaatgactataactacattaggggctttaggagat
gttcaaatattagatggcctagatgaagaagaaaataagagatatatgcaccactataac
ttcccagcatatagtgttggtgaagctagaccatcaagaggtccaggaagaagagaaatc
ggacatggagctttagcagagagagcgttagttccagtaataccttctaaagaagaattc
ccttatgctataagattagtttctgaggtattaagctcaaatggatcaacttctcaaggg
tcagtttgtggatcaacattatcactattagatgcaggtgttccaattaaagacatggtt
gcaggaatagcaatgggtcttataaaagacgatgataaagtagcaatactttcagatata
caaggtatggaagaccacttaggggacatggactttaaggttgcaggtacagagcatggt
ataacagctatacaaatggatataaaaataaatggtatagatgaaaatatattaaaaact
gcacttgagcaagctagagttggtagacttcatatcttaaatgaaatgagaaagactata
gatgctccaaaaccacaattatctaagtacgcgcctaagataataacaatgaatataaac
ccagataagataagagacgttataggaccaggtggtaaggttataactaagattattgat
gaaactggagttaagatagatatagaacaaactggagaagtattcatagctggtattgac
caagatatgatagacttagcacaaaaactaataaatgacatagttgcagaagctgaagta
ggtaaaacttacaaagggaaagtaactagaattactacatttggtgcttttgttgaaata
cttccaggcaaagaaggattacttcatatatctcatatatctcatgagagagtagcaaaa
gtagaagatgttcttaaagttggagatgaagtagaagttaaagtaactgaaatagatgaa
aaaggaagagtaaacttatctagaaaagttctactacctaagccagaatcaactgaaaaa
aaagatcataaataa
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