Romboutsia sp. CE17: HF520_10895
Help
Entry
HF520_10895 CDS
T06535
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
roc
Romboutsia sp. CE17
Pathway
roc03410
Base excision repair
roc03430
Mismatch repair
roc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
roc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HF520_10895 (recJ)
03430 Mismatch repair
HF520_10895 (recJ)
03440 Homologous recombination
HF520_10895 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roc03400
]
HF520_10895 (recJ)
DNA repair and recombination proteins [BR:
roc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HF520_10895 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HF520_10895 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HF520_10895 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
BH1974-like_central
Motif
Other DBs
NCBI-ProteinID:
QJA09434
LinkDB
All DBs
Position
complement(2272036..2274516)
Genome browser
AA seq
826 aa
AA seq
DB search
MIFNKKWTLKHKGKVNKSELSEKINISPEISQILKNRGIEDEKSAEIFMNPSLDYLRDPF
LMKDMKKAVERIQKAIENNESIYIYGDYDVDGVSSTSILYLYFDSINYPVSYYIPNRLEE
GYGINEDAIRKIHEQGCNLIISVDCGITSVKEVELANELGIDVIITDHHECQSEIPNAYA
VINPKQEDCNYPFDMLCGCGVAFKLIQALTPEEVFKTSMYDYLEIATLATICDIVPLVDE
NRIIVKNGLKLMKEGKNLGLRELIKVCGVDTEKIGSSHIGFAIGPRINASGRLGHSYLGV
QLFTTKSQYEASEIARMLEEKNNERQMIEAKMYHEAEEIIKSNERYENDKVLVIANEGWQ
HGIIGIVASKLTEKYYKPTILLTIENGEATGSARSIKGFSIFDALMKCKHLLNKFGGHDQ
AAGLGLDADKVDILRDEVNKIADYNLTSEDMIENINVEFELAEDKVSLDLVDELHKLEPF
GLSNPSPRFIMRNLVLDDIFTLGKNKQHLKLNVYNENTYECIGFNMAHLKENFKPGDKVD
ILFQLDENNYMGNRTVQFLLKDMRMSHPKNAMKDKISLKLFSKIVPNNENNLYTINSDGK
NLISTNINGKYTIEGSKDINIFDYLVDDTLVITNTVNGFYRAISDLSLLEEDFDINYREN
TINIAKLQLIFSPNIDKIDVKRYNNIVLYDYLYNTKEYSYLSESKNKDCNIIKYYNETDQ
LYLKNIINNIIPERDEFIVVYKLALVNKIFELDMLDIKKTFNIMPIKVFTILNVFKELSL
LDFNLDYDNNTMSISLLEKPNKKLNLDESIILKNLKDLKDEYSKSY
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
ttgatatttaataaaaaatggacattaaaacacaaaggaaaagttaataaaagtgaatta
agtgaaaaaataaatatttctccggaaattagtcaaatattaaaaaatagagggattgaa
gacgaaaaaagtgcggaaatattcatgaacccttctttagattatttgagagatccattt
ttaatgaaggatatgaagaaagctgtagaaagaatacaaaaagcaatagaaaataatgaa
agtatatacatatatggagattatgacgttgatggggtatcttcgacatcaatactttat
ttatattttgattctattaactatcctgttagctattatataccaaatagattagaagaa
ggatacgggataaatgaagatgctataagaaaaattcatgaacaaggatgtaacttaatt
ataagtgtggactgtggaattacttctgtaaaagaagttgaattagcaaatgaattagga
atagatgttataataacagatcaccatgaatgccaaagcgaaataccaaatgcatatgca
gttataaatccaaaacaagaagattgtaactatccatttgatatgctttgtggatgtgga
gttgcctttaagttaatacaagctttaactccagaagaagtatttaaaactagtatgtac
gattatttagaaatagctacattggctacaatttgtgatattgttccattagtagatgag
aatagaataatagtaaaaaatggtttaaaacttatgaaagaagggaaaaatctaggatta
agagagcttatcaaagtatgtggtgtagacactgaaaaaataggatcatcacatataggt
tttgctataggacctagaataaatgcttctggaagattaggacattcttacttaggagta
cagttatttacaactaagagtcagtacgaagccagtgaaatagctagaatgctagaagaa
aagaacaatgaaagacaaatgatagaagctaagatgtatcatgaagctgaagaaattata
aaatcaaatgaaagatacgaaaatgataaggttctagtaattgcaaatgaaggctggcaa
catggtataattggtatagttgcatcaaagcttacagaaaagtattataaacctactata
cttcttactatagaaaatggtgaggcaactggttcagcaagatctataaaaggatttagt
atttttgatgctcttatgaaatgtaaacatttattaaataaatttggaggacatgaccaa
gctgcaggtttaggattagatgcagataaggtagatatactaagggatgaagttaataag
atagcagattataatcttacttctgaagacatgatagaaaatattaatgtagagtttgaa
ttagctgaagataaggttagtttagatttagtagatgagcttcataaattagagcctttt
ggtcttagtaatccaagtcctagatttataatgagaaatttagttttagatgatatattt
actttgggtaaaaataagcaacacttaaagcttaatgtatataacgaaaatacttatgag
tgtataggatttaatatggctcacttgaaggaaaactttaagcctggagataaagttgat
atattatttcaattagatgaaaataattatatgggtaatagaactgttcagtttttactt
aaagatatgagaatgtctcatccgaaaaatgccatgaaggataaaatttctttaaaatta
ttttcaaaaatagttcccaataatgagaataacttgtatactattaattctgatggtaaa
aacctaataagcacaaatataaatgggaaatatactatagaaggcagcaaagatataaat
atatttgactatttggtggatgatacattagtaataactaatacagtaaatggtttttat
agagctatctcagatttatcattgctagaagaagactttgatatcaattaccgagaaaat
actataaatatagctaaactacaacttatattttcaccaaatattgataaaatagatgta
aaaagatataataatattgttctttatgattatttatataatactaaagaatattcgtat
ctaagtgaaagtaaaaataaagattgtaatattattaaatattataatgaaacagaccaa
ttatatttgaagaacattataaataacatcattccagagagagatgagtttatagtagta
tataaattagctctagtaaataaaatttttgaactagatatgctagacataaaaaagaca
tttaatataatgcctataaaagtatttacaatattaaatgtttttaaagaattgtcatta
ttagattttaatttagattacgataataatacaatgtctataagcttattagaaaagcca
aacaaaaaattaaatctagatgagagtataatacttaaaaatctaaaggatttaaaagac
gaatattcaaagagctattag
DBGET
integrated database retrieval system
