Romboutsia sp. CE17: HF520_12450
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Entry
HF520_12450 CDS
T06535
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
roc
Romboutsia sp. CE17
Pathway
roc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
roc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HF520_12450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roc03400
]
HF520_12450
Enzymes [BR:
roc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HF520_12450
DNA repair and recombination proteins [BR:
roc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HF520_12450
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
HHH_5
AAA_11
PIF1
NAT10_TcmA_helicase
T2SSE
AAA_22
SLFN-g3_helicase
ATPase_2
UvrD-helicase
DEAD
HHH_2
nSTAND3
DNA_pol_lambd_f
SRP54
Thymidylate_kin
NPHP3_N
MeaB
TrwB_AAD_bind
UvrD_C
AAA_14
RsgA_GTPase
KTI12
AAA
AAA_5
AAA_16
5_3_exonuc
ABC_tran
HHH_3
ResIII
cobW
AAA_28
AAA_29
NTPase_1
FtsK_SpoIIIE
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
QJA09709
LinkDB
All DBs
Position
complement(2619847..2622069)
Genome browser
AA seq
740 aa
AA seq
DB search
MERLEGTISDIVFKNEDNGYTIAHLANSMDEVVIVGCMPTLSVGESIEVEGKWVNHKTYG
TQFEVSKFMPVTPTSVEGIYSYLASGMIHGIGEKMAKRIIDKFGVNTLDIIQKNPERLEE
VEGIGGKKLKQIVKSYEENRELRNIIIELSPYGITPNYCLKIYKKYKNKSIDIINKNPYR
LAEDIRGIGFKIADEIASKIGIDKYSDDRICQGILYALNQSLSSGHTYLPKGLLIQESRK
ILDVDESMIDNCIMSLAYDQKIHIELMNNQQLIYLMPYYMSENGVCKQIIKLSQCEFDDL
NINIDEEIRYIEEEENIKLAKNQILAVKEAINTGVLVVTGGPGTGKTTTINTIIKVFENN
KKKVVLAAPTGRAAKRMSETSQREAKTIHRLLEMGFATDSDDLMFLKNEEDPINADVVIL
DEVSMVDILLMYSLLRAIKPGTRVILVGDSDQLPSVGAGNVLKDIIDSDVINVVKLNEIF
RQAQESMIVVNAHKINKGEPLYLNVKGKDFFFIRKNTNEEILEEIVEIVSKRLPNFYKFD
KMKDIQVLASMRKGDVGVTNLNMALQKSLNKPEKFKVEENFAKRTFRVGDKVMQIKNNYT
KKWESEDRRDSGEGIYNGDIGYIYHIDKENKKVYVLFDQIKIVEYTYDELDELDHSFCTT
IHKSQGSEFPAVVIPITWAPPMLLSRNLLYTAVTRAKKLVVLVGDVKYLEYMIKNNRTND
RYSNLSNKLNKFKQEGLLLK
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggaaagattagaaggaacgataagtgatattgtatttaaaaatgaagataatggatat
acaatagctcatttagctaatagcatggatgaagttgtaatcgtaggctgtatgccaact
ttatcagtaggagagagtatagaggttgaaggtaaatgggttaatcataaaacttatgga
actcaatttgaggttagtaagtttatgccagttacaccaacttctgtggaaggaatatat
tcttacttagcatcaggaatgatacatggtataggagaaaaaatggctaagagaattatt
gataagtttggtgtgaataccttagatataatacaaaaaaatccagaacgtttagaagaa
gttgagggtataggcggtaaaaaattaaaacaaatagtaaaaagctacgaagaaaaccga
gagcttagaaatattataatagagctatctccatatggtataactcctaattattgcttg
aaaatatataaaaagtataaaaataaatctattgatattataaataaaaatccatataga
ttagcagaagatataagaggtattggctttaagatagcagatgaaatagcaagtaagata
gggatagataagtattcagatgatagaatatgtcaaggaatactatatgccttgaatcag
tctttaagcagcggacatacatatttgccaaagggacttttaatacaagagtctagaaaa
atattagatgtagatgagtctatgatagataactgtataatgtctttagcatacgatcaa
aagattcatatagaactaatgaataatcagcagttaatctatcttatgccatattacatg
tcagaaaatggtgtttgcaaacaaataataaagctatctcaatgtgaatttgatgaccta
aatataaatattgatgaagaaattagatatatagaagaagaggaaaatataaaattagct
aaaaatcaaattttagctgtgaaagaagctataaatacaggtgtattagtagttacggga
gggcctggtactggaaaaacaacaacaataaatactattattaaagtattcgaaaataac
aaaaaaaaggttgttttagcagctcctacaggtcgtgcagctaaaaggatgagtgaaaca
tctcaaagagaagctaagacaatacatagattactagaaatgggatttgcaacagatagt
gatgatttaatgtttttaaaaaatgaagaagaccctataaatgctgatgttgttattttg
gatgaagtatctatggtagatatattattgatgtatagtttacttagagcaataaagcca
ggaacaagggttatattagtaggagatagtgatcagttgccttctgttggagctggaaat
gttttaaaagatataattgattctgatgtaataaatgtagttaaattaaatgaaattttt
agacaagctcaagaaagtatgatagtagtaaatgcccataagattaataaaggagagcca
ttatatttaaatgttaaaggtaaagacttcttttttataaggaaaaatactaacgaagaa
atattagaagaaatagttgaaattgtaagtaaaagattacctaatttttacaagtttgat
aaaatgaaggatattcaagtgcttgcatctatgagaaaaggagatgtaggagtaacgaat
cttaatatggctctacagaaaagtctaaataaaccagaaaaatttaaagttgaagaaaat
tttgctaagagaacttttagagttggtgataaagttatgcaaattaaaaacaactacact
aaaaaatgggaaagtgaagatagaagagatagtggagaaggtatatataatggagatatt
ggatatatataccatatagataaagaaaataaaaaagtatatgttctatttgatcaaatt
aaaatagttgaatatacttatgatgagctagatgaattagatcatagtttttgtacaacc
atacataagagtcaagggagtgaatttcctgcagtagttatacctataacttgggctccg
cctatgttattaagtagaaatctattatatacagcagtaactagagctaaaaaattagtt
gtgctagttggagatgttaagtatttagagtacatgataaaaaataatagaactaatgat
agatattctaatttatctaataaattaaataaatttaaacaagaggggctgttattaaaa
taa
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