Romboutsia sp. CE17: HF520_13715
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Entry
HF520_13715 CDS
T06535
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
roc
Romboutsia sp. CE17
Pathway
roc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
roc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HF520_13715 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
roc03021
]
HF520_13715 (rpoC)
03400 DNA repair and recombination proteins [BR:
roc03400
]
HF520_13715 (rpoC)
Enzymes [BR:
roc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HF520_13715 (rpoC)
Transcription machinery [BR:
roc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HF520_13715 (rpoC)
DNA repair and recombination proteins [BR:
roc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HF520_13715 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl_2
Flot
Motif
Other DBs
NCBI-ProteinID:
QJA09861
UniProt:
A0A6H1X393
LinkDB
All DBs
Position
2829925..2833413
Genome browser
AA seq
1162 aa
AA seq
DB search
MFELNNFESIKIALASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYRRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPMSHIWYFKGIPSRMGLLLDM
SPRSLEKILYFASYVVINPGETGLNAKQLLTEKEYRSAVEKYGYNSFEVGMGAEAVKELL
KNIDLERESKELRADLKDSTGQKRVRTIRRLEVVEAFKKSGNKPEWMILDAIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPK
KMALELFKPFVMDKLVKEGYAHNIKSAKSIVEKVKPEVWDVLEDVIKSHPVLLNRAPTLH
RLGIQAFEPVLVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLSVNNI
LAPKDGTPITTPSQDMVLGCYYLTIEAQGGEKGTGTIFKDYNEMLLAYQTGAVQLHALVK
MRVVLPDGRKSLVESTVGRFIFNENIPQNLGFVDREVDPFGLEVDFLVDKKSLGKIIDKC
FRKHGNTETAILLDHIKSLGFKFSTRGGITVAVADMKVPEAKKAYLAEAEEKVDKYERAY
RRGLISNEERYERVIETWSETTDKVTDALMEGLERLNNIYIMAHSGARGSKNQIRQLAGM
RGLMANASGKTVEVPVKSNFREGLSVMEYFTSSHGARKGLADTALRTADSGYLTRRLVDV
SQDVIVREIDCGTTDTTEIVAIKDGNEVIEELYDRIVGRYTIDSIVDPQTGEVLVEADSM
IKEDDAEKIIAVGIEKVRIRTVLNCKTTHGVCSKCYGRNLATGKEVNIGEAVGIIAAQSI
GEPGTQLTMRTFHTGGVAGGDITQGLPRVEELFEARKPKGLAIITEITGRVEIDETGKRK
EVVIIPESGENQVYAIPYGSRIRVKQGQMVEAGDPLTQGSINPHDIVRVKGIGGVQEYIV
KEVQRVYRMQGVDVNDKHIEVIVRQMLSKVKVEDPGDTDLLPGGYEDVLTFNKCNEEAIA
NGLRPATAKRTLLGITKASLATESFLSAASFQETTRVLTEAAIKGKEDRLIGLKENVILG
KLIPAGTGMKRYKNIAVEKIQD
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaacaattttgagtcgataaaaatagctttagcttctccagaaaaaatt
agagaatggtcaagaggagaagtaaaaaaacctgaaactataaattaccgtactttaaaa
cctgaaaaagacggtttattctgtgaaagaatatttggaccacaaaaagactgggaatgt
cactgtggtaaatatagaagagttagatacaaaggtgtagtttgtgatagatgtggagta
gaagttactaaatcaaaggtaagaagagaaagaatgggacatatagagctagcagctcct
atgtctcatatctggtacttcaaaggtataccaagtagaatgggtcttttacttgatatg
tctccaagatctttagagaaaatattatattttgcttcatatgttgtaattaatccagga
gaaactggactaaatgcaaaacaactattaactgaaaaagaatatagaagtgcagttgaa
aaatacggatataactctttcgaagtagggatgggtgcagaagcagttaaagaactactt
aaaaatatagatttagaaagagaaagtaaagaattaagagctgacttaaaagacagtact
ggtcaaaaaagagttagaactataagaagattagaagtggtagaagctttcaaaaaatct
ggaaataagccagaatggatgatactagatgctataccagtaataccaccagatttaaga
ccaatggttcaattagatggtggaagatttgcaacttcagacttaaatgatttatataga
agagttataaatagaaataacagattaaagagattattagaacttggagctccagacatt
atcgtaagaaatgaaaagagaatgcttcaagaagcagtagatgctttaatagataatggt
agaagaggtagacctgtaacaggacctggtaatagacctcttaagtctttatcagatatg
ttaaaaggaaagcaaggacgtttccgtcaaaacttacttggtaaacgtgttgactattca
gggcgttctgttatagttgttggaccagagcttaaattctatcaatgtggtcttccaaag
aaaatggctcttgaattattcaagccatttgtcatggataagttagttaaagaagggtat
gctcataatataaagagtgcgaaatctatagtagaaaaagttaaaccagaagtatgggac
gttttagaagatgttataaagagccatccggttctattaaaccgtgctcctactcttcat
agattaggtatccaagcatttgaacctgttttagttgaaggtaaagctataaagcttcat
ccacttgtatgtactgcatacaatgccgacttcgacggtgaccaaatggcggtacacgta
cctttatcagttgaagcacaagcagaagcaagattcttaatgctttctgtaaataatata
cttgctcctaaagatggtactccaataactactccttctcaggatatggttctaggatgt
tactacttaacaatcgaagctcaaggcggagaaaaaggaacaggaactatatttaaagat
tacaacgaaatgctacttgcttaccaaacaggtgcagtacaactacatgcattagtaaaa
atgagagttgttttaccagacggtagaaaatctcttgttgaaagtacagtaggtagattc
atatttaatgaaaatatacctcaaaacttaggttttgtagatagagaagtagatccattt
ggattagaagttgacttcttagttgacaagaagtctctaggtaaaataatagataagtgc
ttcagaaaacatggaaacacagaaactgcaatattactagaccatataaaatctctagga
ttcaaattctcaactagaggtggtataacagttgcagttgctgatatgaaggttcctgaa
gctaaaaaagcatacttagcagaagcagaagaaaaagttgataagtatgaaagagcatat
agaagaggtttaatatctaacgaggaaagatatgaaagagttatagaaacttggtcagaa
actactgataaagtaacagatgctcttatggaaggacttgaaagattaaataacatctat
ataatggctcactctggtgccagaggttctaagaaccagataagacagttagctggtatg
cgtggtctgatggccaatgcatctggtaaaacagttgaggttccagttaaatctaacttc
cgtgaagggttatcagtaatggaatacttcacatcatcacacggtgctagaaagggtctt
gccgatacagcactacgtactgccgattcaggttacttaacaagaagacttgttgatgtc
agtcaagatgttatagttagagaaatagattgtggtacaacagatactacagaaatagtt
gcaataaaagatggaaatgaagtaatcgaagaactatacgatagaatagttggtagatat
actatagattctatagtagatccacaaactggagaagttttagttgaagctgattctatg
ataaaagaagatgatgctgaaaaaataatagcagtaggaatagaaaaagttcgaataaga
actgttcttaactgtaagactactcatggagtatgttctaagtgttacggaagaaactta
gctacaggtaaagaagttaatataggtgaagctgttggtataatagcagctcaatctatc
ggtgaaccaggtacacagcttacaatgcgtacattccatacaggtggggttgccggagga
gatataactcaaggtcttccaagggttgaagaattatttgaggcaagaaaaccaaaaggt
ttagctataataactgaaataactggtagagttgaaatagatgaaactggtaagagaaaa
gaagttgttataataccagaatcaggtgaaaaccaagtttatgcaataccatatggttca
agaataagagttaaacaaggtcaaatggtagaagcgggagatccattaactcaaggatct
ataaatccacatgatatcgtaagagttaaaggtataggtggagttcaagagtatatagtt
aaagaggttcaaagagtttatagaatgcaaggggttgacgttaacgataagcatatagaa
gttatagtaagacaaatgctatctaaagttaaagttgaagatccgggagatacagattta
ttaccaggtggatatgaagatgtattaacattcaataagtgtaatgaagaagctatagct
aatggattaagaccagcaactgctaagagaactttattaggtataactaaagcatctctt
gctacagaatcattcttatctgctgcatcattccaagaaactactagagttttaactgaa
gcagcaataaaaggaaaagaagatagacttataggtttaaaagaaaatgtaatattaggt
aagttaataccagcaggaacaggtatgaagagatataaaaacatagctgttgaaaaaata
caagactaa
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