Romboutsia sp. CE17: HF520_13890
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Entry
HF520_13890 CDS
T06535
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
roc
Romboutsia sp. CE17
Pathway
roc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
roc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HF520_13890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
roc03021
]
HF520_13890
03400 DNA repair and recombination proteins [BR:
roc03400
]
HF520_13890
Enzymes [BR:
roc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HF520_13890
Transcription machinery [BR:
roc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HF520_13890
DNA repair and recombination proteins [BR:
roc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HF520_13890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
Rrn6_HB
DUF2325
AMIN-like
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
QJA09895
UniProt:
A0A6H1X396
LinkDB
All DBs
Position
2853064..2854011
Genome browser
AA seq
315 aa
AA seq
DB search
MIEIEKPKVDIIELSEDYRYGKFVIEPLERGYGITIGNALRRVLLSSLPGVAVNSIKIDG
VLHEFSTVPGVKEDVTEIILSLKELSATIDGEGSRTLKIEAQGPCSIKGSDIICPPDVEI
LSKDLLIATLDDNAKFNMEISIDKGRGYVSAEENKTENMPIGVLPVDSIYTPVEKVSYHV
ENTRVGQKTDYDKLVLEVQTNGSINPQEGISLAAKVLVEHLNLFIDLTEHVSNVEIMVEK
EEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVEELANKSEDDMMKVRNLGKKSLEEVI
QKLEELGLGLKPSEE
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaatagaaaaacctaaagtagatataatagaacttagcgaagactatagatat
ggtaaattcgttatagagcctctagaaagaggttatggtataactataggaaatgcttta
agaagagtattattatcatctttaccaggggttgctgtaaattctataaaaatagatgga
gttcttcatgaattctcaacagtaccaggtgttaaagaagatgtaactgaaataatatta
tctttaaaagagctttcagctactattgatggagaaggaagtagaactcttaaaatagaa
gcacaaggaccatgctctatcaaaggatcagatataatatgtcctcctgatgttgaaata
ttaagtaaagacttattaatagctacgctagatgataatgcgaagtttaatatggaaata
tctatagataaaggtagaggatatgtttctgctgaagaaaataaaacagagaatatgcct
ataggtgttttacctgtagactcaatatatactcctgttgaaaaagtgagctaccatgta
gaaaatacaagagtaggtcaaaaaacagattatgacaagttagtacttgaagttcaaact
aacggtagcataaatcctcaagaaggaatatctttagctgctaaagtactagttgagcat
ttaaatctattcattgatttaacagagcacgtaagcaatgttgaaataatggtagaaaaa
gaagaagaccaaaaagaaaaagttcttgaaatgactatagaagaattagatttatcagtt
agatcttacaactgtttaaagagagcgggaataaatacagttgaagagttagctaataag
tctgaggacgatatgatgaaggttagaaaccttggtaaaaagtcacttgaggaagttatc
caaaagttagaagaactaggattaggtcttaaaccaagcgaagaatag
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