Rossellomorea sp. DA94: P8596_10330
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Entry
P8596_10330 CDS
T10138
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rod Rossellomorea sp. DA94
Pathway
rod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P8596_10330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rod03019
]
P8596_10330
Messenger RNA biogenesis [BR:
rod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P8596_10330
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
CopK
Motif
Other DBs
NCBI-ProteinID:
WGG47968
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Position
1987024..1988691
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AA seq
555 aa
AA seq
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MSKIKNESIKVIPLGGVGEIGKNMYVIEVDHEIFVIDAGLMFPENEMLGIDVVIPDIQYL
IENKERVKGIFLTHGHEDSIGAISYVLTKIKAPVYGTRLTNALVKARLKDEHIRDDVKFY
TIHSDSNLTFDGVNVTFFKTTHSIPDSVGVCIHTSEGVIVHTGEFKFDQSAKHLYRPDLG
KMAQIGEKGVLCLMSDSKEAERPGFTTSESVIEQHITNALRKASGRVIVACFASNLIRLQ
QVFDAAEQNNRKVAVVGKSLKRVYDVALKLGYLHVRDEMIIGIDEIEDYPKDEVLIIATG
TQGEPFEALQRMSKRSHRLVNIEEGDTVLITATPSPGMEVIVGRTIDMLYRAGANVLTAS
KKVHVSGHGSQEDLKFMLNIMKPKYFIPIQGEYKMLVAHTQLAHDTGLPYKQIFIMDKGD
VLQYKDGKMRMSGRVQAGNVLIDGIGIGDVGNIVLRDRKLLSEDGVFTVVITINRRSKSI
VSGPEIISRGFVYVRESEELIDGAGGIVTDVVHSYLQKGSFEWTAIKQDIRDQLNYYLFN
KTRRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaagataaagaatgaaagcattaaggtgataccactcgggggagtgggagagata
ggcaagaacatgtacgtgattgaagtcgaccatgaaatattcgtgattgacgcaggactt
atgtttcccgaaaatgaaatgctagggatcgatgtcgtcattcctgacattcaatatttg
attgaaaataaagagcgggtaaaagggattttcctgactcatggacatgaagacagtatt
ggtgcgatttcatatgtattaaccaagatcaaggctccagtctatggaacacgcttgacg
aatgcactggtaaaagcacgtctgaaggatgaacatatcagggatgatgtgaagttctat
acgattcattctgatagcaatcttacttttgatggtgtgaatgtgacgttctttaaaacc
acacacagtattcctgattcagtcggggtttgcatacatacatctgaaggggtcatcgtc
catactggcgaattcaagttcgatcaatcggcaaagcatctttaccggccggatttagga
aagatggcgcaaatcggtgagaagggtgtcctttgtctaatgtctgatagtaaagaagcc
gagagaccagggtttacaacatcagagtcggtaatcgaacaacatatcacgaacgccctg
aggaaagcatcagggagagtgatcgtagcatgcttcgcttcgaatttaattcgacttcag
caggtatttgatgcagctgagcagaataatcgaaaagtggctgtggtcgggaagagttta
aagagagtctatgatgtggccttgaagctcggataccttcatgtccgggatgaaatgatc
atcggaattgacgaaatagaggattatcctaaagatgaagtcctcatcatagctacagga
actcaaggggaaccgtttgaagcgcttcaacggatgtccaagcgttcccatcgtctagta
aacattgaagaaggtgatacggtcctcataaccgccacgccttccccaggcatggaagtg
atcgtcgggaggacgatcgatatgctttatagagccggggcaaatgtattgaccgcgtcg
aaaaaagttcatgtgtcaggtcatgggagtcaggaagacttaaagttcatgttgaatatc
atgaaaccaaagtacttcataccgatccagggtgaatataaaatgctcgtcgctcatacc
cagctcgcccacgataccggactgccttataagcagatctttatcatggataagggagac
gtgcttcaatataaggatggtaagatgagaatgagcggccgtgttcaggcgggaaatgta
ttgatcgatgggatcggtatcggggacgtagggaatattgtccttcgtgatcgtaagctg
ttatcggaagacggtgtgtttacggttgtcatcaccatcaacagaaggtccaagtctatc
gtctcaggacctgaaatcatctccaggggattcgtatatgttagagagtccgaggaattg
atcgatggggcagggggaatcgtgacggatgtggtccattcctatctgcaaaaaggttct
tttgaatggacggcaatcaagcaggacatccgggatcaattaaattattacctatttaac
aaaacacgaagaagaccgatgattctaccgatcatcatggaagtataa
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