Rossellomorea sp. DA94: P8596_20840
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Entry
P8596_20840 CDS
T10138
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
rod Rossellomorea sp. DA94
Pathway
rod02020
Two-component system
rod02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rod00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
P8596_20840 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
P8596_20840 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rod03021
]
P8596_20840 (rpoN)
Transcription machinery [BR:
rod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
P8596_20840 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_23
Sigma70_r4
HTH_21
HTH_12
HTH_31
HTH_38
HTH_20
Motif
Other DBs
NCBI-ProteinID:
WGG45150
LinkDB
All DBs
Position
complement(4004933..4006273)
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AA seq
446 aa
AA seq
DB search
MNLKAGLFQNQQLKLQMTQQLSQAITILQYSTMELNAYLEAKQLENPLIQVEPPKQDSLY
QREPYTYKRNAGNPGNTVDWYEYVSVPTSTLTDALSVQINLKSLTSFDRKILDELICSLD
DNGYLRVDEPSFMQKHGLEWAQLETYIKKIQELEPAGIGARSLQECISLQLQRKADVPPL
VKQIVTDHFQAFGEKKWKAISKELGVELKDIQQAADFIQHCNPRPGSKYSQHIAEYITPE
LVVNVIGGHTVAVSLYDGTTVNVTYNEEYTDFMKDHPDKEVQTYIQEKEQDFRWLLQSLR
QRKQTILKVGKILAEKQKSFFLEGPPAIQPLTLKQVADEIDVHESTISRAVKGKYMQTPF
GIFELKYFFTSAIKSVKLEDSEAASARTVKNELQKLIDEEDKKKPLSDQKIVNLLLDKGY
DVSRRTIAKYRDQMGITSSTMRKRYE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgaaagcaggactttttcaaaatcaacaactgaaacttcaaatgactcaacag
ctttctcaagccatcaccatcctccaatattctacgatggaactgaatgcttatttagaa
gctaagcaattagagaatccccttatacaagtagaaccgcctaaacaagactccctctat
caacgagaaccttatacgtataaacgaaatgccggcaatcccgggaatacggtggattgg
tatgaatatgtttccgtgccgacgagtacccttacggatgccttatctgttcaaataaat
ttgaaatcgcttacttctttcgatcggaagatacttgatgaattaatatgcagcttggat
gacaacggttatttaagagtggatgaaccatccttcatgcaaaaacatggtctggaatgg
gctcaactggaaacctatattaagaagattcaggagttggaaccggctgggataggggcg
agatccctgcaggagtgcatttcccttcagttgcagagaaaagcagatgttccccctttg
gtgaagcagattgtaaccgatcattttcaagccttcggggaaaagaagtggaaagcgatc
agcaaggagcttggggttgaactgaaagacatccagcaggctgctgatttcatccaacac
tgtaacccgaggccgggatcgaaatactcccagcatatcgctgaatacattacgcctgag
cttgtggtgaacgtgatcggcgggcataccgtggccgtatcgttatatgatgggacaacc
gttaacgtcacgtataatgaagagtacaccgatttcatgaaagatcacccggataaggaa
gtccaaacctatattcaagagaaggagcaggatttccggtggctcctgcaaagtttacga
cagcggaaacagacgatcctaaaagtggggaagatacttgctgagaaacagaagtcgttc
tttttggaagggccacctgcgatccagcccctgacgttaaagcaggtggcggatgaaatc
gatgtacacgaatcgacgatcagccgcgccgtgaaggggaagtatatgcaaactcctttt
ggaatcttcgagttgaagtacttctttacctcagcgattaaatcggtcaaactggaggat
tcagaagcggcgtctgcccggaccgtgaaaaatgagcttcaaaaactgattgatgaagaa
gacaagaaaaagcctctatcagaccagaagattgtcaatctactattggataaaggctat
gatgtttccagaaggaccatcgccaaataccgtgatcaaatggggatcacttcttctacg
atgaggaagagatatgaatag
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