Roseateles sp. L2-2: ACQZ13_04685
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Entry
ACQZ13_04685 CDS
T11386
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rog Roseateles sp. L2-2
Brite
KEGG Orthology (KO) [BR:
rog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rog03016
]
ACQZ13_04685
Enzymes [BR:
rog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACQZ13_04685
Transfer RNA biogenesis [BR:
rog03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACQZ13_04685
Prokaryotic type
tRNA splicing ligases
ACQZ13_04685
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XUK40692
LinkDB
All DBs
Position
1001889..1003283
Genome browser
AA seq
464 aa
AA seq
DB search
MSHSLRLQRAFARSHIDLRVEDGVYTVRNDSAQATILLPASLPLEEKAVKQLLAFASVKT
PGGDAAVCAACATPDFHPGSIAPVGAVVATPMDVVIPAAIGTDINCGMRLVTTGLSLAQA
APHQSALIARLKAVLLENARNVPTPTQAFKALFDDGPLAFLDRLAPEGLWAGVDLDRLAA
EVDRCVGLDRLGGHSRHAPHAFVDGRDRFRDPCLGTPGGGNHFVELQVVDRILDRHAAYE
HGLRAGDVVVMIHSGSRDMGFHVGARWMDRARDAWPAGVRHPESKLYALEGPLAGEYLEA
MGVAARYAWANRVVLAEMVRRELADLFGADSSKLVVDVPHNVVLTEHGLNIHRKGSTPAH
EGQLALIPGSMGDGSYVARGLGHPDWLWSCSHGAGRRMRRQETRRLQAVDRSDAGWQCVT
LREERRIEEAPEAYKPIGPVIDAQTSAGLIEGVAKLRPWVTFKA
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgtcccactcccttcgactccagcgcgcgtttgcgcgctcgcacatcgacctgcgcgtc
gaggacggcgtctacaccgtccgcaacgacagcgcccaagccaccatcctgctgccggcc
tcgctgccgctggaggaaaaagccgtcaagcaactgctcgccttcgcttcggtgaagacg
cccggcggcgacgccgccgtctgcgccgcgtgcgcgacgcccgacttccatccgggctcg
atcgcgccggtcggcgcggtggtcgcaacgccgatggacgtcgtcatcccggccgccatc
ggcaccgacatcaactgcggcatgcggctggtgacgaccggcctctcgctggcgcaggcg
gcgcctcaccagtccgctctgatcgcgcgcttgaaggcggtgctgcttgagaacgcccgc
aacgtcccgacgccgacgcaggccttcaaggcgctgttcgacgacgggccgctggccttc
ctcgaccgcctcgcgccggaaggcctgtgggccggcgtcgacctcgaccggctcgcggcg
gaggtcgatcgctgcgtcgggctcgaccggctcggcgggcactcgcgacacgcgccgcat
gcgttcgtcgacggccgcgatcgcttccgcgatccctgcctcggcacgccgggcggcggc
aaccacttcgtcgaactccaggtcgtcgatcgcatcctcgaccggcatgccgcctatgag
cacgggctgcgcgcgggcgacgtcgtggtcatgatccacagcggctcgcgcgacatgggc
ttccatgtgggcgcccgctggatggaccgcgcccgcgacgcatggcccgccggcgtgcgt
catccggagagcaagctctacgcgctcgaaggtccgctggccggcgagtacctcgaagcc
atgggcgtcgccgcccgctacgcctgggccaaccgcgtcgtgctggcggagatggtgcgg
cgggaactggcggacctgttcggtgcggacagctccaagctggtcgtggatgtgccgcac
aacgtcgtgctcaccgagcacgggctcaacatccatcgcaagggctcgacgccggcgcac
gaagggcagctcgcgctgatcccgggctcgatgggcgacggctcgtacgtggcgcgtggg
ctcggccatccggactggctctggtcctgcagccacggcgcgggtcggcggatgcgtcgc
caggagacgcgacgcctgcaggccgtcgaccgcagtgatgcgggctggcaatgcgtgacc
ctgcgcgaggagcggcgcatcgaggaagcgcccgaggcctacaagccgatcgggcccgtc
atcgatgcacagacgagcgcggggctcatcgaaggcgtcgcgaagctgcggccgtgggtg
acgttcaaggcgtga
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