Roseateles sp. L2-2: ACQZ13_24935
Help
Entry
ACQZ13_24935 CDS
T11386
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rog Roseateles sp. L2-2
Pathway
rog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACQZ13_24935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rog03019
]
ACQZ13_24935
Enzymes [BR:
rog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACQZ13_24935
Messenger RNA biogenesis [BR:
rog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACQZ13_24935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
APOBEC4_like
Motif
Other DBs
NCBI-ProteinID:
XUK39033
LinkDB
All DBs
Position
complement(5578395..5579954)
Genome browser
AA seq
519 aa
AA seq
DB search
MTDTTPTPNPLFDTLPLDPKLLRAVSDQGYATMTPIQAKAIPIVLSGRDVMGAAQTGTGK
TAAFSIPLLQRMLKHENASMSPARHPVRALVLAPTRELADQVANNVKAYAKHTNLRVACV
FGGIDMKPQTLQLKAGVEVLIATPGRLLDHIEAKNAVLNHVEYVVLDEADRMLDIGFLPD
LQRILSYLPKTRQTLLFSATFSPEIKRLAQSYLQDPELVEVARPNATASTVEQRFFSVDD
DDKRAAVKQLLRQREIRQAIVFVNSKLGAARLARAFERDGLRTAALHGDKSQDERLKSLE
AFKRGEVDLLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAFTLV
TKGDARLVGEIEKLIKKKLDLEPIELEGERRRFDGDRGERGDRAPRGDRGDRGGDRGAER
APQGEGGGERRDFRREREDRRDEAYGSHGAHAPARAPRQAYDPLFDKPYEATQGGDVAAW
EKGPANAPRGGLSANIKPKKKVAALFGAKRPPVTADSES
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaccaccccgacgcccaaccctcttttcgacacgctgccgctggaccccaag
ctgctgcgcgccgtgtccgatcagggctacgcgacgatgacgcccatccaggccaaggcg
atcccgatcgtcctctccggccgcgatgtgatgggcgccgcccagaccggcaccggcaag
accgccgcgttctcgatcccgctgctgcagcgcatgctcaagcacgagaacgcctcgatg
tccccggcccgccacccggtgcgcgcgctggtgctggccccgacccgcgagctggccgac
caggtcgccaacaacgtcaaggcctacgccaagcacaccaacctgcgcgtggcctgtgtc
ttcggcggcatcgacatgaagccgcagaccctgcagctcaaggccggcgtcgaggtcctg
atcgccacgccgggtcgcctgctcgaccacatcgaagccaagaacgccgtgctgaaccac
gtcgagtacgtcgtgctcgacgaggccgaccggatgctggacatcggcttcctgccggac
ctccagcgcatcctgagctacctgcccaagacgcggcagacgctgctgttctcggcgacc
ttctcgcccgagatcaaacggctggcgcagagctacctgcaggatccggagctggtggag
gtcgcccgcccgaacgcgacggcctcgacggtcgaacagcgcttcttcagcgtcgacgac
gatgacaagcgtgccgcggtcaagcagctgctgcgccagcgcgagatccgtcaggcgatc
gtgttcgtgaattccaagctcggcgccgcgcgcctggcccgcgccttcgagcgcgacggc
ttgcggaccgccgccctgcacggcgacaagtcccaggacgagcgcctgaagtcgctggag
gcgttcaagcgcggcgaggtggacctgctggtcgcgaccgacgtggccgcgcgcggcctg
gacatcgccgacctgccggcggtcttcaacttcgacgtcccgttcaatgccgaggactac
gtgcaccgcatcggccgcaccggccgcgcgggggcgtcgggcctggccttcacgctggtg
accaagggcgacgcgcgcctggtcggcgagatcgagaagctgatcaagaagaagctggac
ctggagccgatcgagctcgagggcgagcgtcgtcgcttcgacggcgaccgtggcgagcgc
ggtgatcgcgctccccgtggcgatcgtggtgatcgtggcggtgaccggggtgccgaacgc
gcgccgcaaggcgagggcggcggcgagcgtcgcgacttccgtcgtgaacgcgaggatcgc
cgcgacgaggcctacggctcgcacggcgcgcatgcgccggcgcgcgcgccacgccaggcc
tacgacccgctgttcgacaagccgtatgaggcgacgcagggcggcgacgtggcggcctgg
gagaaggggccggccaacgcgccgcgcggcggcctgtcggccaacatcaagccgaagaag
aaggtcgcggcgctgttcggtgccaagcgcccgccggtcacggcggacagcgagtcctga
DBGET
integrated database retrieval system
