Roseovarius sp. THAF27: FIU89_20285
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Entry
FIU89_20285 CDS
T06352
Name
(GenBank) PD-(D/E)XK nuclease superfamily protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
roh
Roseovarius sp. THAF27
Brite
KEGG Orthology (KO) [BR:
roh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roh03400
]
FIU89_20285
Enzymes [BR:
roh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FIU89_20285
DNA repair and recombination proteins [BR:
roh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
FIU89_20285
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QFT82971
LinkDB
All DBs
Position
4064173..4067124
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AA seq
983 aa
AA seq
DB search
MFEPQDTPRVFGVPLGADFPRALVDGLCHAYAAQPPEALARVHLIVNTRRMGRRIRALFD
AGPARLLPRISLVTDFGETLGLAHIPDPIPPLRRRLELTKVVAALLDQEPDLAPRAALYD
LSDSLAKLMDEMHGEGVTPDHITRIDTGDQSGHWERIKTFLGIISPYFETDEDAPDVETR
QRRVIETYARMWQSQPPDHPIILAGSTGSRGATRLLMKTVATLPQGAVVLPGFDADQPEH
VWTRLQDTPDRSEDHPQYRFAQLLADLDSPPSIIRHWPGSEPVSPQRNRLVSLALRPAPV
TDEWLSHGPALAADIGPATDGMTLLEAPSARIEALCIAMRLREAVEDGQTAALITPDRTL
TRRVASALDRWGITPDDSAGMPLHHSAPGRFLRHVAECLNAPLDAAQLLTLLKHPLTHGA
GQRGPHLRLTRELELYLRRNGPPVPTLQTLDAWADKIDDPYLATWLVWLRANFFDNAMPE
SLPLGARVEAHMTLAEAISRGPEPDAPLRLWDEDAGREAWKCVSELAENAEYGQAMRAID
YINLFHAVLSRGTVRQQLETDPRVLIWGTLEARVQGADLLILAGLNEGTWPETPPRDPWL
NRAMRHEAGLLLPERRIGLAAHDFQQAVTATKEVWITRAIRSDDAQTVPSRWLNRLTNLL
KGLPAEGGQAALEGMKTRGLTAIARAEAFEAVDPAPSAPRPAPIPPVGTRPRELSVTRIE
KLIRDPYAIYADKILRLRPLDPLMRAPDARLRGEVLHDVLEHVIKATMDDPERLTPAFLT
DQTVSVLAETVPWGEARALWLARMARIAAWFVDTETQRRNLARPTAFEQQASARLDPLDF
TLTAKADRIDMDAGGRLHIYDYKTGAPPSAKSQKAFEKQLLLEAALAERAGFGELAPGPV
ERAVFIGLTGDPKEVPAPLEDAPPDRVWAELKDLISRYMDANQGYLSRRAMKTRDMQGDY
DQLARFGEWDITDTANPEKVGRW
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagccgcaggacacgccgcgcgtcttcggcgtcccgctcggcgccgattttccc
agggcgctggtcgatgggctgtgccacgcctatgccgcccaaccgcccgaggcgctggcc
cgcgtccatctcatcgtcaacacccgccgcatgggccgccgcatccgcgcgctgttcgac
gcggggccggcgcgcctgctgccccggatcagcctggtcaccgatttcggcgaaacgctg
ggcctggcccatatccccgaccccattccgccccttcgtcggcggctggaactgaccaag
gtcgttgcggcgctgcttgaccaggagcctgatcttgcgccccgcgccgcgctttacgac
ctgtccgacagcctggccaagctgatggacgaaatgcatggcgagggggttacgccggac
cacatcacgcgcatcgacaccggcgaccagtcgggccattgggagcgcatcaagaccttc
ctgggcataatcagtccctatttcgaaaccgacgaagatgcgcccgacgtggaaacgcgc
caaaggcgggtgatcgaaacctatgcccggatgtggcagtcacaaccgcccgaccacccc
atcatccttgccggctcgaccggctcgcgcggggccacgcgcctgttgatgaagacggtc
gcgacattgccgcagggcgctgtggttcttcccggcttcgacgccgatcagccagagcac
gtctggacccggttgcaggacacacccgaccgcagcgaagaccatccgcaataccgcttt
gcccagcttctggcggacctggacagccccccatccatcatccggcactggccgggatca
gagcctgtctcgccccaacgcaaccgtctggtctctctcgcgctgcgccccgcgccggtg
acggacgagtggctgtcgcacggccccgcgcttgccgccgacatcggcccggccaccgac
ggcatgaccctgctggaggcgccctcggctcggatcgaggcgctttgcatcgcgatgcgc
ctgcgcgaggcggtcgaagacggccagaccgccgccctgatcacacccgaccggacgctc
acgcgccgcgtcgcctcggcgctcgatcgctggggcattacgcccgacgacagcgcgggc
atgccgctgcaccattccgcgcccggccgctttctgcgccacgtggccgaatgcctgaac
gcgccgctcgacgccgcgcaactgctgacgcttctgaaacatccgctgacacacggcgcg
ggacagcgcggcccgcatctgcgcctcacgcgagagctggagctttacctgcgccgcaat
ggcccgcccgttccgaccctgcaaacgctcgacgcctgggccgacaagatcgacgacccc
tatctcgccacctggctggtctggctgcgcgccaacttcttcgataatgccatgcccgaa
agcctccccttaggggcgcgtgtcgaggcgcatatgaccctcgccgaggccatctcgcgc
gggccggagccggacgcgccgctgcgcctctgggacgaggatgccgggcgcgaagcgtgg
aaatgcgtctctgagctggccgaaaacgccgagtacgggcaggcgatgcgcgccatcgac
tatatcaacctgtttcacgcggtgctgtcgcgcggcaccgtgcggcagcagctggaaacc
gacccccgcgtgctgatctggggcacgctcgaggcgcgcgtgcagggcgccgatcttctg
atcctcgccgggctgaacgaaggcacctggcccgagacgccgccgcgcgatccctggctg
aaccgcgccatgcggcacgaggccgggctccttctgcccgagcggcgcatcggcctggcg
gcgcatgatttccagcaggccgtgaccgccacaaaggaggtgtggatcacccgcgccatc
cggtccgacgacgcgcagacggtgccctcgcgttggctcaatcgtctgaccaaccttctg
aagggcctgccggccgaaggtggccaggccgcgctggagggcatgaagacccgtggcctg
accgccatcgcgcgcgccgaggcgttcgaagccgtcgatcccgccccgtcggccccccgt
cccgcgccgatcccgccggtcgggacgcgccccagggagctgtccgtcacccggatcgaa
aagctgatccgggatccctacgcgatctatgccgacaagatcctgcgcctgcgcccgctc
gacccgctgatgcgcgcgcccgatgcccgcctgcgcggcgaggttctgcatgacgtgctg
gagcatgtcatcaaggccacgatggatgatcccgagaggctgacacccgcctttttgacc
gatcagacagtctctgttctggcggaaaccgtgccctggggcgaggcgcgtgcgctctgg
cttgcgcgcatggcccgcatcgccgcgtggttcgtcgacaccgagacgcagcgccgcaac
ctggcccggcccaccgcgttcgagcaacaggcctcggcgcggctcgacccgctggatttc
acgctgaccgccaaggccgaccggatcgacatggacgcgggcggtcgcctgcatatctac
gattacaagaccggcgcgccgccctccgccaagtcgcaaaaggcgttcgaaaagcagctt
ctgctggaggccgccctggccgaacgcgccgggttcggcgagctggcgcccggcccggtg
gaacgcgccgtattcatcgggctgaccggcgaccccaaggaagtgccggcgcccctcgaa
gacgccccgcccgatcgggtctgggcggagttgaaggacctcatcagccgctacatggat
gcgaaccagggctacctttcgcgccgcgcgatgaagacacgggacatgcagggcgactat
gaccagcttgcccgcttcggcgagtgggacatcaccgacacggcgaaccccgaaaaggtg
ggcagatggtag
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