Roseateles amylovorans: N4261_16295
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Entry
N4261_16295 CDS
T08701
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
roi
Roseateles amylovorans
Pathway
roi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
roi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
N4261_16295 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roi03400
]
N4261_16295 (sbcB)
Enzymes [BR:
roi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
N4261_16295 (sbcB)
DNA repair and recombination proteins [BR:
roi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
N4261_16295 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
N4261_16295 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N4261_16295 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
AP205_coat
Motif
Other DBs
NCBI-ProteinID:
UXH76598
UniProt:
A0ABY6AUJ5
LinkDB
All DBs
Position
complement(3926441..3927898)
Genome browser
AA seq
485 aa
AA seq
DB search
MHEMTFYWHDYETFGRVPRRDRPAQFAGLRTDADLNEIGEPLMVYCRPPLDALPDPESCL
LTGILPQTCAEQGLPEHQFAAAILDELSRPGTVGLGYNTIRFDDEVTRFLFWRNLIDPYA
REWQNDCGRWDLLDVVRCAYALRPDGIEWPKHEDGRPSFKLEHLTAANGLAHEAAHDALS
DVRATIALARLIKQKQPKLWEFCLKLRRKDAVWAEIGTNRPFLHISGMYGTERGCIALVW
PLAAHPTNKNELIVWDLGTDPAELLTLEADAIRQRLYTKQDDLPEGVTRLPIKTIHVNKS
PIVISALKILSPEMAERWGLDLAQGLAHAETLAQRGAELSGRWKQVFQRPAGEGGADVDE
DLYGGFLSSDDRRALERLRGLSPEALADRVAQGKVAFEDGRLEELLFRYRARNWPEHLSP
DERARWEQHCAVRLHQGDGGVQTLEQFFERIDTLAEAAQEADDERAQEILSALYDWAEQI
APPPP
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgcatgagatgactttctactggcacgactacgagactttcggacgcgtgccgcgccga
gatcgcccggcccagttcgccggcctgcggaccgatgcggacctcaacgagatcggcgag
ccgctgatggtgtattgccggccgccgctggatgcgctgcccgatcccgagtcctgcctg
ctgaccggcatcctgccccagacctgcgccgagcagggcttgcccgagcaccagttcgca
gcggccatcctggatgagctgtcgcgtccgggcacggtggggctgggttacaacaccatc
cgcttcgacgacgaagtcacgcgcttcctcttctggcgcaacctcatcgatccgtatgcc
cgcgagtggcagaacgactgcggccgttgggacctgctggacgtggttcgctgcgcctat
gcgcttcggccggatggcatcgaatggcccaagcatgaggatggtcgcccctctttcaag
ctggagcacctgaccgctgccaacggtctggcccatgaagcagcgcatgacgccctgtca
gacgtgcgcgccaccatcgcgctggcccggctgatcaagcagaagcagcccaagctgtgg
gagttctgcctcaagctgcggcgcaaggatgcagtgtgggctgagatcggcacgaatcgg
ccgttcttgcacatctccggcatgtacggcaccgagcgtggctgcatcgcgctggtgtgg
ccgctggcggcccatcccaccaacaagaacgagttgattgtctgggacctgggcaccgat
cccgcagaactgctgacgctggaggcggacgccatccgtcagcgcctgtacaccaagcag
gacgacctgccggagggcgtgacccggctgccgatcaaaaccatccacgtcaacaagtcg
ccgatcgtgatttcggcgctgaagatcctgtcgccggagatggccgagcggtggggcctg
gatctggcgcaggggctggcccatgccgagacgctggcccagcggggcgcggagctgtcg
ggccgctggaagcaggtgttccagcgaccggcgggcgagggtggggcggatgtcgacgaa
gacctttacggcgggttcctgtccagcgacgatcgtcgcgcgctcgagcgcctgcgaggg
ctgtcgcccgaagccctggccgaccgggtggcgcaaggcaaggtggccttcgaggatggg
cgtctggaggaactgctgttccgctaccgcgcccgcaactggcctgagcacctgagtccg
gacgagcgcgctcgttgggagcagcactgcgccgtgcgcctgcatcagggcgacggtggc
gtgcagacgctggagcagttcttcgagcgcatcgacaccctggccgaagccgcccaggag
gccgacgacgagcgggcgcaggagatcctgtccgcgctgtacgactgggccgagcagatc
gcaccgccgccgccctga
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