Roseateles amylovorans: N4261_21790
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Entry
N4261_21790 CDS
T08701
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
roi
Roseateles amylovorans
Pathway
roi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N4261_21790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roi03019
]
N4261_21790
03009 Ribosome biogenesis [BR:
roi03009
]
N4261_21790
Enzymes [BR:
roi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
N4261_21790
Messenger RNA biogenesis [BR:
roi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N4261_21790
Ribosome biogenesis [BR:
roi03009
]
Prokaryotic type
rRNA processing factors
N4261_21790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UXH77591
LinkDB
All DBs
Position
5263049..5266195
Genome browser
AA seq
1048 aa
AA seq
DB search
MKRMLINATQQEERRLAIVDGQKLMDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFREGADVRSAKIQDVIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRIEGEDREELKDALDQLEYPKGMSLIARTAGIGRSAAELQ
WDLNYMLKLWTAIDEATQGSKGAFLIYQESSLVIRAIRDYFTADIGEILIDTDDIFEQAQ
QFMTHVMPETAHKVKRYRDDAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDHTEALVSV
DVNSARATRGGDIEETATRTNLEAADEIARQMRLRDLGGLIVVDFIDMEESKNRREVEQR
LRDALRQDRARVQFSSISKFGLLELSRQRLRPALSEGSHITCPRCNGTGHIRDTESSALQ
ILRMVQEESMKDNTAAVHVQVPVEVTSFLLNEKRTEITKIELKQRVTVLLVPNKHLETPN
YKLERLRHDDPRLENLQASYTMIEEPQDEVGITRRGAEKKNKQEPVIKGILPEQPAPMPA
PAVAPVKAAEPVAAAPAPTPAAPVDAGGGFFGWIKKVFGGAPAPAPTPEPEAKTAEPARK
DRGERGERSGRGDRGDRNRRGERGERGERGERGDRAERGDRGEQKARDGKPRGEGKPAQD
GAQARGERTDRGERTERGERGDRPERGDRAERGDRSERGDRGRRNEARADKPELAADARP
EARGEQRPERGDRAERGERSDRGEGRRRREERGDRPARTDANGVVATQEQLLPVAGAEAA
DLSQAAHAESPTAFADTLPDGLALNLETGEERQGRRRRRRGGRDRGAEGAEGAVEGQELS
ADAGVSADGAVATDSALNEGVAADGQEAPVGEDAEGQGGRRRRGRDRYRRDRREGELAGT
EGAESQDSPQQLELGAEASVPVAAPAPSAPVAVAPVAVAPVAEQAVVTAAAASPAPAPAP
VAQAPAPAAVPRFELPIGDLNAVAEGAGLVWVNSDADKIAAVQAAIAAEPAPAPLGREPA
PVVVSDDGPLVLVETRKDLNQIKLPFEA
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaatgcgacgcagcaggaagagcgtcgcctggccatcgtcgat
ggccagaagctgatggacttcgagactgaaatcgaaggccgcgaacagcgcaagggcaac
atctacaaggcggtcgtgacgcgcgtcgagccgtcgctcgaagcctgtttcgtggactac
ggcgaggaccgccacggcttcctcccgttcaaggaaatctcccgccagtacttccgcgaa
ggcgccgatgtgcgctccgccaagatccaggacgtgatcaaggaaggccaggaactgctg
gtccaggtggaaaaggaagagcgcggcaacaagggcgcggccctgaccaccttcgtctcg
ctggccggccgctacctggtgctgatgcccaacaatccgcgcggcggcggcgtctcgcgc
cgcatcgagggcgaggatcgggaagagctcaaggacgccctggaccagctcgaatacccg
aagggcatgtcgctgatcgcccgcaccgccggcatcggccgcagcgccgccgagctgcag
tgggacctgaactacatgctcaagctgtggaccgccatcgatgaggcgacccagggcagc
aagggtgcgttcctgatctatcaggagtcgtcgctggtgatccgcgcgatccgcgactac
ttcaccgccgacatcggcgaaatcctgatcgataccgacgacatcttcgagcaggcccag
cagttcatgacccatgtgatgccggagacggctcacaaggtcaagcgctaccgcgacgac
gcgccgctgttcagccgcttccagatcgaacaccagatcgagaccgccttcagccgcacg
gtgaacctgccgtccggcggcgccatcgtgatcgaccacaccgaggcgctggtctcggtg
gacgtcaactccgcccgcgccacccgcggcggcgacatcgaggaaaccgccacccgcacc
aacctggaagcggccgacgagatcgcccgccagatgcgcctgcgcgatctgggcggcctg
atcgtggtggacttcatcgacatggaggagtccaagaaccgccgcgaggtcgaacagcgg
ctgcgcgatgcgctgcgccaggaccgtgcccgcgtgcagttcagctccatcagcaagttc
ggcctgctcgaattgagccgccagcgcctgcgcccggcgctgagcgaaggcagccacatc
acctgcccgcgctgcaacggcaccggccacatccgcgacacggaatcctccgcgctgcag
atcctgcgcatggtccaggaagagtccatgaaggacaacaccgccgccgtgcatgtgcag
gtgccggtggaagtcaccagcttcctgctcaacgagaagcgcaccgagatcaccaagatc
gaactcaagcagcgcgtgaccgtgctgctggtgcccaacaagcacctcgagacgccgaac
tacaagctcgagcgcctgcgccatgacgacccgcgcctggaaaacctgcaggccagctac
accatgatcgaagagccgcaggacgaggtgggcatcacccgccgcggcgccgagaagaag
aacaagcaagagccggtgatcaagggcatcctgcccgagcaacccgcgccgatgccggcc
cccgccgtcgcgccggtcaaggccgccgagccggtggcagccgctcccgcacccacgccg
gccgcaccggtcgacgcgggtggtggcttcttcggctggatcaagaaggtgttcggtggt
gcgcccgccccggcacccacgcccgaacccgaagccaagaccgccgagccggcccgcaag
gaccgcggcgaacgcggtgaacgcagcggccggggtgaccgtggcgaccgcaaccgccgt
ggcgaacgcggtgaacgcggtgaacgtggcgagcgtggtgaccgcgccgagcggggcgat
cgtggcgagcagaaggcccgcgacggcaagccgcgcggcgaaggcaagccggcacaggac
ggcgcccaggcccgtggcgagcggacggatcgcggtgagcgcaccgaacgtggcgagcgc
ggtgatcgtccggaacggggtgaccgtgccgagcggggtgaccgcagcgaacgcggtgac
cgtggccgtcgcaatgaagcacgcgccgacaagcccgaactggccgcggacgcacgtccc
gaggcccgcggcgagcagcgcccggagcgtggcgaccgtgccgaacgcggtgagcgcagc
gaccgcggcgaaggccgtcgtcgtcgtgaggagcgcggcgatcgcccggcacgtaccgat
gccaacggcgtcgtggccacgcaggagcaactgctgccggtcgccggcgcggaagcagcg
gatctttcccaagccgcgcacgctgaatcgcccaccgccttcgccgacacgctgccggac
ggtctcgcgctgaacctggaaacgggtgaagagcgtcagggccgccgtcgccgtcgccgt
ggtggccgcgatcgtggcgccgagggtgcggaaggtgcagtcgaaggccaggagctgtcg
gccgatgccggcgtgtccgccgacggcgccgtagcaaccgacagcgccctgaacgaaggc
gttgccgcagacggccaggaagcgccagtcggtgaagacgccgaaggccagggtggacgt
cgtcgccggggtcgcgaccgttatcgccgcgaccgccgtgaaggcgagctggcgggcacc
gaaggcgccgagtcgcaggactcgccgcagcagctggaactcggcgcggaagcgtcggtg
ccggtcgctgcaccggccccgtcggcacctgtggcggtggcccctgtggccgtcgcaccg
gtggctgagcaggccgtggtgaccgctgccgcagcctcgccggcaccggcaccggcacct
gttgctcaggctccggctcccgccgcggtgccgcgcttcgagttgccgatcggcgacctg
aatgcagtggccgaaggtgcgggcctggtctgggtcaacagcgatgccgacaagatcgcc
gccgtgcaggctgcgatcgctgctgagccggcgcccgcgcccctgggccgcgagcccgcg
ccggtggtcgtcagcgatgacggtccgctggtgctggtggagacccgcaaggacctgaac
cagatcaagctgcctttcgaagcctga
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