Roseateles amylovorans: N4261_24835
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Entry
N4261_24835 CDS
T08701
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
roi
Roseateles amylovorans
Pathway
roi02020
Two-component system
roi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
roi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
N4261_24835
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
N4261_24835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
roi03021
]
N4261_24835
Transcription machinery [BR:
roi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
N4261_24835
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
HTH_23
NAT_N
Motif
Other DBs
NCBI-ProteinID:
UXH78139
LinkDB
All DBs
Position
5998204..5999751
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AA seq
515 aa
AA seq
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MRPTLQVRLSQHLALTPQLQQSIRLLQLSTLELHQEVEQMLASNPLLETDEEHDAPLPAA
TQERLTEREEREERSAGTTEGGVGESTGETSGDGAAADEIRAEDFGTTERDDWENGTEGD
DFDGIREQPAGASPGSGGDDDERPETEAPDASLQDVLRAQMAGMQLDEVERAALLALIES
LNDDGYLEDTLEELVVALLGEDGDEEQREQLLAHFKCALKWLQSMEPAGVGARELSECLE
LQLRTHPRSPEQALAIVICRRHLELLAKRDWRRLMSLTGADDELLRGAQALISGLEPKPG
RRYARNDNRPVVPDVIVQKAGRNFRVMINPDVLPKLRINDLYAQALRATRGGVSNSPLGG
QLQEARWFIKNIQQRFDTILRVSEAIVERQRGFFTHGELAMKPLVLREIADELGLHESTI
SRVTTAKYMATPWGTFELKYFFGSSLSTEAGGNASSTAVRALIKQFIAAEDTTSPLSDSQ
LSTMLGEQGITVARRTVAKYREALKLAPANLRKAR
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgacgctacaggtacgcctgtcccagcatctggcgctgacgcctcagctccag
cagtccatccgtctgctgcagttgtcgacgctggaactgcaccaggaagtggagcagatg
ctggccagcaatccgctgctcgagaccgatgaagagcatgacgccccgttgcccgccgcc
acccaggaacgcctgaccgaacgcgaagagcgcgaagagcgcagcgcaggcacgaccgag
ggcggcgtgggcgagagcaccggggaaacttccggcgacggggcagcggccgacgagatc
cgcgccgaggacttcggcaccaccgagcgcgacgactgggaaaacggcaccgagggtgac
gacttcgacggcatccgcgagcagcccgcaggcgcctcgccgggaagcggcggcgacgac
gatgagcgcccggagaccgaggcgcccgacgcgtcgctccaggacgtgctgcgcgcgcag
atggccggcatgcagctcgacgaggtcgagcgcgccgcgctgttggcgctgatcgagtcc
ctcaacgacgacggctacctggaagacacgctggaagagctggtggtcgccttgctgggc
gaggacggcgacgaggagcagcgcgagcagttgctcgcccacttcaaatgtgcgctcaag
tggctgcaatcgatggagcccgccggtgtcggggcgcgcgagctgtcggaatgcctggag
ctgcagcttcgcacccatccgcgatcgcccgagcaggcgctggcgatcgtcatctgccga
cgccacctcgagttgctggccaagcgcgactggcgccgcctgatgtccctgaccggcgcg
gacgacgagttgctgcgcggtgcgcaggccttgatctccggtctggagcccaagcccggc
cggcgctatgcccgcaatgacaaccggccggtggtgcccgatgtgatcgtgcagaaggcc
ggtcgaaacttccgggtgatgatcaatccggatgtgctgcccaagctgcgcatcaatgat
ctctatgcccaggccctgcgggcgacccggggcggcgtgagcaactcgcccctgggtggc
cagttgcaggaggcgcgctggttcatcaagaacatccagcagcgcttcgacaccatcctg
cgggtcagcgaggcgatcgtcgaacgccagcgcggtttcttcacccatggcgaactggcg
atgaaaccgctggtgctccgcgagatcgccgatgagctgggtctgcatgaatcgacgatc
tcccgggtcacgaccgccaagtacatggccacgccctggggcaccttcgagctgaaatac
ttcttcggctccagtctctccaccgaagccggcggcaatgcctccagcaccgccgtgcgg
gcgttgatcaagcagttcattgcggcggaggacaccaccagtccgctgtcggacagccag
ttgtcgaccatgcttggcgagcagggcatcaccgtggcccggcgcaccgtcgccaagtac
cgcgaggcgctcaagctcgcgcccgcgaacctgcgcaaggcccgctga
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