Roseateles sp. MS654: ACO228_07765
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Entry
ACO228_07765 CDS
T11465
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
roj Roseateles sp. MS654
Pathway
roj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACO228_07765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roj03019
]
ACO228_07765
Enzymes [BR:
roj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACO228_07765
Messenger RNA biogenesis [BR:
roj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACO228_07765
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
P-loop_SecA
DegT_DnrJ_EryC1
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
XRE07385
LinkDB
All DBs
Position
1910706..1912244
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AA seq
512 aa
AA seq
DB search
MSFDALGLSQPLLRAIADAGYSSPTPIQSQAIPAVLTGGDLMAGAQTGTGKTAGFTLPVL
ERLSAGKPIRDAKGRIAIRALVLTPTRELAAQVEESVRTYGKYLPLTSMVMFGGVGMQPQ
VDRLRKGVDILVATPGRLLDHAQQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALLP
AKKQSLLFSATFSDEIKALADRLLDNPGLIEVARRNATADTIAQKVHPVDRDKKKELLAH
LITKHDWHQVLVFTRMKHGANRLAEFLDKQGITAMAIHGNKSQGARTKALAEFKSGELQV
LVATDIAARGIDIDQLPHVVNYELPNVAEDYVHRIGRTGRAGAQGEALSLVCVDEEGFLR
DIQKLIKREIPREVVPGFEPDPNAKAEPIVMGRMVLNGGLGKSSGAPRPAGGGGGGRRGG
GGGGAGRSQGQGRPQGGGQGQARSAQGAQGGQRAGGQPQGQRQGAQGQGQRQAQGQGGQR
QGQGQGARHGGGHGSQGNRPAGSALTRPKSTS
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgacgcattggggctgtcccagcccctgctccgcgcgatcgccgatgccggc
tactcgtcccccacccccatccaatcccaggcaattcccgcggttctgaccggcggcgac
ctgatggccggcgcccagaccggcaccggaaaaaccgctggcttcacgctgccggtgctg
gagcggctgtccgccggcaagccgatccgcgacgccaagggccgcatcgcgatccgcgcg
ctggtgctgacgcccacgcgcgaactggcggcgcaagtcgaggaaagcgtgcgcacctat
ggcaagtacctgcccctgaccagcatggtcatgttcggcggcgtgggcatgcagccgcag
gtcgaccgcctgcgcaagggcgtcgacatcctggtggcgacgccgggccggctgctcgac
cacgcgcagcagggcacgctggacctctcgcaggtgcagatcctggtgctggacgaggcc
gaccgcatgctggacatgggcttcatccacgacatcaagaaggtgctggcgctgctgccg
gccaagaagcagagcctgctgttctcggcgaccttcagtgacgagatcaaggcgctggcc
gaccgcctgctggacaacccgggcctgatcgaggtcgcgcgccgcaatgcgacggcggac
acgatcgcgcagaaggtgcatccggtcgaccgcgacaagaagaaggaactgctggcgcac
ctgatcaccaagcacgactggcaccaggtgctggtgttcacgcggatgaagcacggcgcc
aaccgcctggccgagttcctggacaagcagggcatcaccgcgatggcgatccacggcaac
aagagccagggggcccgcaccaaggcgctggccgagttcaagagcggcgagttgcaggtg
ctggtggccaccgacatcgccgcccgcggcatcgacatcgaccagttgccgcacgtcgtc
aactacgagctgccgaacgtggccgaggactatgtgcaccgcatcggccgcaccggccgc
gccggcgctcagggtgaggccctgtcgctggtatgcgtcgacgaggaaggtttcctgcgc
gacatccagaagctgatcaagcgcgagatcccgcgcgaggtcgtgccgggcttcgagccg
gatcccaacgccaaggccgaacccatcgtgatgggccgcatggtgctgaacggcggcctg
ggcaagtcgtcgggcgcgccgcgtccggccggtggtggcggtggcggccgccgcggcggc
ggcggtggtggcgcgggccggtcgcagggccagggccgtccgcaaggcggcggccagggt
caggcgcgttccgcacagggcgcccaaggcggacagcgagccggcggccagccacagggc
cagcgtcagggcgcgcaaggccaggggcagcgtcaggcgcaaggccaaggcgggcaacgc
cagggtcagggccagggcgcgcggcatggcggtgggcacggcagccagggcaaccgcccc
gccggctccgcgctgacgcgccccaagtcgacgtcctga
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