Roseateles sp. MS654: ACO228_22185
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Entry
ACO228_22185 CDS
T11465
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
roj Roseateles sp. MS654
Brite
KEGG Orthology (KO) [BR:
roj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
roj03016
]
ACO228_22185
Enzymes [BR:
roj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACO228_22185
Transfer RNA biogenesis [BR:
roj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACO228_22185
Prokaryotic type
tRNA splicing ligases
ACO228_22185
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
XRE05432
LinkDB
All DBs
Position
complement(5200431..5201645)
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AA seq
404 aa
AA seq
DB search
MKNYNEMEVAGGVPVKMWTQGVPVEDEARLQLANAAKLPVVFKHIAAMPDVHLGIGATVG
SVIPTLKAIIPAAVGVDIGCGMMACKTTLRAEDLPDNLGPLRSAIEQAVPHGRTPKGRDV
GAWENPPEMVDEAWSELAPEFAEICRDYPKLKGTNNHKHLGTLGTGNHFIEVCLDELGFV
WFMLHSGSRGVGNAIGTMFIELAKKDAMQHQANLPDVNLAYFEEGAKYFGDYVRAVGWAQ
KYAALNREVMMRRVIAAAKKVIGKRFESHIEAVNCHHNYVQKETHFGQDVFVTRKGAVSA
KHGQMGIIPGSMGARSYIVRGKGNAESFESCSHGAGRTMSRTEAKRRFTLKDQRAATEGV
ECRKDKDVIDEIPMAYKDIDAVMAAQQDLVEVVHTLKQVVCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaagaactacaacgagatggaagtcgccggcggcgtgccggtgaagatgtggacgcag
ggcgtgcccgtcgaggatgaggcacgcctgcagctggccaatgcggcgaagctgccggtg
gtgttcaagcacatcgcggcgatgcccgacgtgcacctgggcatcggcgcgacggtgggc
tcggtgatcccgacgctgaaggcgatcatcccggcggcggtcggcgtcgacatcggctgc
gggatgatggcctgcaagaccacgctgcgcgccgaggacctgccggacaacctgggcccg
ctgcgctccgccatcgagcaggcagtaccgcatgggcgcacgcccaagggccgcgacgtc
ggcgcgtgggagaacccgcccgagatggtcgacgaggcctggtccgagctggcccccgag
ttcgcggagatctgccgcgactatcccaagctcaagggaaccaacaaccacaagcacctg
gggacgctgggcaccggcaaccacttcatcgaggtctgcctggatgaactgggcttcgtg
tggttcatgctgcactcgggctcgcgcggcgtcggcaatgcgatcggcacgatgttcatc
gagctggcgaagaaggacgcgatgcagcatcaggccaacctgcccgatgtgaacctggcc
tacttcgaagagggcgcgaagtacttcggcgactatgtccgcgcggtgggctgggcgcag
aagtacgcggcgctgaaccgcgaggtgatgatgcgccgcgtgatcgctgccgcgaagaag
gtgatcggcaagcgcttcgagagccacatcgaggcggtcaactgccaccacaactacgtg
cagaaggagacccacttcggccaggacgtcttcgtgacccgcaagggcgcggtcagcgcg
aagcacggccagatgggcatcatcccgggcagcatgggtgcgcgcagctacatcgtgcgc
ggcaagggcaatgcggagagcttcgagagctgctcgcacggcgcgggccgcacgatgagc
cgcacggaggccaagcgccgcttcacgttgaaggaccagcgcgccgccaccgaaggcgtc
gagtgccgcaaggacaaggacgtcatcgacgagatcccgatggcctacaaggacatcgat
gcggtcatggcggcgcagcaggacctggtggaggtggtgcacacgctgaagcaggtggtg
tgtgtgaagggctga
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