Roseovarius sp. AK1035: RAK1035_0682
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Entry
RAK1035_0682 CDS
T05517
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rok
Roseovarius sp. AK1035
Brite
KEGG Orthology (KO) [BR:
rok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rok03019
]
RAK1035_0682
Enzymes [BR:
rok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RAK1035_0682
Messenger RNA biogenesis [BR:
rok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RAK1035_0682
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
HA2_N
AAA_19
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AWZ19393
LinkDB
All DBs
Position
complement(685337..687895)
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AA seq
852 aa
AA seq
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MLSPAFMPWATGPCPEVRAGNPLAKGAPMPDNAGMTPDLPIQEAIPALIDALRARGRAVL
QAPPGAGKTTVVPLEMLQAGLTEGRILMLEPRRLAARAAAERMAQSLGEKPGETVGYRVR
GEARVGPQTRIEVVTEGILTRMVQSDPELRGVGAVIFDEFHERSLNADLGLALCLEVAGA
LRDDLILLVMSATLDAAPVAQLMGDVPVITSEGRSYPVEIRWRDRPRPKTRRFEDALADL
VSEAVAETTGGVLVFLPGEGEIRRLETLLRARLPGDCQVRPLFGAMDFAAQRAAIAPVSE
GRKIVLATSIAETSLTIEDIRVVIDGGLARRARFDPGSGMSRLVTEAVTRAEATQRAGRA
GRVAEGRCYRLWTRGEEGALQAFAPAEIEAADLAGLALELALWGAAPEDLPLLTPPNPGA
YAEARALLEMLGALDATGRIIPHGKALAALPLHPRLAHMLASAGPDAAALAALLAERDPL
GRGAPVDLALRLSAVRDLRAFEARYVHVVNRGPLERIKTEARRLAAQAKGRGQGRRSDAE
CAALAYPDRIGLRRKGDAPRYVLSGGKGAVLPEGDPMAQTRLIVATDLDGDPREARIRQA
IAISEAEIRGLFADRIAWQDVCLWDRRERRVIARKQERFGALVLDDRHWLDAPEERVARA
MLDGVRDLGLAWSDPARRFVARVQLVRDGGADLPDMSEAALMAGLDEWLLPYLRDVRSAP
EWKRFEMLDALRARLDWDQMQMLDRAAPAQFTTPLGRKIPIDYSGEYPEITLRLQEMFGQ
TTHPTVGRTPLRVTLLSPGHRPVQTTLDLPGFWSSSYADVRKDMRGRYPRHPWPEDPTEA
DPTLRAKPRNIP
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
ttgctgtcgcctgccttcatgccttgggccaccggcccttgtccagaggtgagggcgggc
aaccctctggccaagggcgcgccgatgcccgataacgcgggcatgacgcccgatcttccc
attcaagaggccattccagcccttatcgacgcgctgcgcgcgcgggggcgtgccgtgctt
caggccccgcccggtgcgggcaagaccacggtggtgccgcttgagatgttgcaagctggc
ctgactgaggggcgcatcctgatgctggagccgcgccgtcttgctgcccgcgccgccgcc
gagcggatggcgcagagccttggggaaaagcccggtgaaaccgtgggctaccgggtgcgc
ggcgaggcccgagtggggccgcagacccggatcgaggtggtgacagaggggatattgacc
cgcatggtccaatcggaccccgagttgcgcggcgtgggtgcggtgattttcgacgagttt
cacgaacgctcgctgaatgctgatctggggttggcgctgtgtcttgaggtggcgggggcg
ctgcgcgacgatctgatcctgttggtgatgtcggccacgcttgatgccgcgccggtggcg
cagcttatgggggatgtgcctgtcatcacctcggaggggcgcagctatccggttgagatc
cgctggcgcgaccgtccccggcccaagacgcggcggttcgaggacgcgctggccgatctg
gtgagcgaggcggtggccgagacaaccggcggcgttctggtgttcttgcccggcgagggg
gaaatccgacgccttgaaacgctgctgcgcgctcgcttgcccggtgattgccaggtgcgg
ccactttttggggcgatggattttgcggcgcaacgggccgcaattgcgccggtatcagag
gggcgcaagatcgtgctggcaacgtcgatcgccgaaacctcgctgaccatcgaggatatt
cgcgtggtgatcgacggcgggttggcgcggcgcgcgcggtttgatcccggttccggtatg
tcgcgcttggtgacagaggcggtgacgcgcgccgaggcaacgcagcgcgcagggcgcgca
ggccgtgtggccgaagggcgctgctaccggctctggacgcgcggggaagagggggcgttg
caggcctttgccccggcagagattgaggcggcggatttggcggggctggcgctggagctg
gcgctttggggcgctgcccctgaggatttgccgctgctgacgccgcccaatcccggcgcc
tatgccgaggcgcgcgcgctcttggagatgttgggtgcgctcgatgccacgggccggatc
atcccgcatggcaaggcgttggcggcgctgcctctgcatccgcgcttggcacatatgctg
gcctctgccgggccagacgcggcggcgctggcggcgcttttggccgagcgtgatccgttg
gggcgcggtgcgccggttgatctggcgctgcggctgagtgcggtgcgcgacctgcgcgcc
tttgaggcgcgctatgtccatgtggtcaatcgcggtccgctcgagcggatcaagaccgag
gcgcggcgtctggcggcgcaggccaagggcaggggccaaggcaggcgcagcgatgccgaa
tgtgccgcccttgcctatcctgaccggatcgggctgcgtcgcaaaggggatgctccgcgc
tatgtgctgtcggggggcaagggcgctgttctgcccgagggcgacccgatggcgcagacc
cggctgatcgtcgccaccgatctggatggcgacccgcgcgaggcgcgcatccgtcaggct
atcgcgatttccgaggcagagattcgcgggctttttgcggaccggatcgcgtggcaggat
gtctgcctctgggatcggcgcgagcggcgggtgatcgcgcgcaaacaggaacggtttggc
gcgctggtgctggatgatcgccattggctggatgcgccagaggagcgtgtcgcgcgcgcc
atgctggacggggtgcgcgatctggggctggcgtggagcgatcccgcccggcgttttgtg
gcgcgcgttcagcttgtgcgcgacgggggggcggatctgccggatatgtcagaggcggcg
ctgatggcggggctggacgagtggctcttgccctatcttcgggacgtgcgcagcgcgccg
gagtggaagcggttcgagatgcttgatgcgctgcgcgcgcggctggattgggaccagatg
cagatgctggaccgcgcggcaccggcgcagttcaccacgccgctgggccgcaagattccg
attgattatagcggcgagtatcccgaaattaccctgcgattgcaggaaatgttcggccag
accacgcatcccacggtcgggcgcacaccgttgcgcgtgacgcttttgtcgccgggacat
cgcccggtgcagaccacgcttgatctgccggggttttggtccagctcttatgcggatgtg
cgcaaggatatgcgcgggcgctatccgcgccacccctggcccgaggacccgaccgaggct
gaccccaccttgcgtgccaaaccccgaaatatcccgtga
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