Roseovarius sp. AK1035: RAK1035_1179
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Entry
RAK1035_1179 CDS
T05517
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rok
Roseovarius sp. AK1035
Pathway
rok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RAK1035_1179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rok03019
]
RAK1035_1179
03016 Transfer RNA biogenesis [BR:
rok03016
]
RAK1035_1179
Enzymes [BR:
rok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RAK1035_1179
Messenger RNA biogenesis [BR:
rok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RAK1035_1179
Transfer RNA biogenesis [BR:
rok03016
]
Prokaryotic type
tRNA degradation factors
RAK1035_1179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AWZ19890
LinkDB
All DBs
Position
complement(1186591..1188732)
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AA seq
713 aa
AA seq
DB search
MFKETKKSMQWGEETLTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHETLVMCTVLSH
DLVNDPDIVALIATSAALTISGAPFMGPIAGCRVGFVDGEYILNPEIDDMHDLRNNPEQR
LDLVVAGTKDAVMMVESEAYELTEEEMLGAVTFAHEQLKPVCDLIISLAEDCAKEPFNFT
PPDYSDLYAAVKAAGEEQMRAAFAIRDKQERTHAISAAREAIKAKLSDEQLEDQNLGSAF
KKLESTVLRGDVVKNGNRIDGRRLDEIRPIVCETGLLPRTHGSSLFTRGETQALVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGAPGRREIGHGKLAWRALQAVLPP
ATDFPYTVRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKTSVAGVAMGLVLEEDGSFA
ILSDILGDEDHLGDMDFKVAGTADGITSLQMDIKVAGITPEIMKKALEQAKAGRLHILGE
MNKALSGAAEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGIIKI
ASPNGESIKKAYDMIWSIVAEPEEGKVYDGKVVKLVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQDVKVKLLGFDDRGKVRLSMKVVDQVTGEEIVPEKGEKEAE
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaagagacgaaaaaatcgatgcagtggggggaggaaaccctcactctggaaact
ggcaaaatcgcccgtcaggcggatgggactgtgattgccacgcttggcgagacctcggtc
atggccaatgtgacctttgccaaagaggcaaaacccggtcaggatttctttccgctgacc
gtgcattatcaagagaaatactatgccgcaggcaaggtgcccggcggctttttcaagcgc
gaagcgcgcccctctgagaaagagacgctgaccgcacgcttgatcgaccgtccgatccgc
ccgctgtttgtgccgggtttcaaacatgaaacgctggtaatgtgcaccgtgctgagccac
gatctggtgaatgatcccgatatcgtggccttgatcgcaacctctgcggcgctgacgatt
tcgggcgcgcccttcatgggcccgattgcagggtgccgtgtgggttttgtggacggggaa
tatatcctcaaccccgaaatcgacgacatgcacgatctgcgcaacaaccccgagcagcgt
ctcgatctggttgtcgcaggcaccaaagatgccgtgatgatggtggaatccgaggcctat
gagctgaccgaagaggaaatgctgggcgcggtcacctttgcgcatgaacagctcaagccg
gtttgcgatcttatcatctcgttggccgaagactgtgccaaagagccgttcaatttcaca
ccgccggattactctgatctttatgcggctgtgaaagcagccggtgaagagcagatgcgc
gccgcctttgccattcgcgacaagcaggagcgcacccatgcgatttccgctgcccgcgag
gcgatcaaggccaagctgagcgatgagcagcttgaggatcagaaccttggttcggcgttc
aagaagctggaatcgacggttctgcgcggtgacgttgtcaagaatggcaaccggatcgac
gggcgtcgtttggatgaaatccgtcccatcgtatgcgaaaccggcctcttgccgcggacc
catggctcgtcgctgttcacgcgtggcgaaacgcaggcactggttgtgaccaccctcggc
accggcgatgatgaacagttcatcgacgcgctgcacggcaatttcaaatccaacttcctg
ctgcattataacttccccccctattcggtgggcgaagctgggcgggtcggggcaccggga
cgtcgtgaaatcggtcacggcaaactcgcgtggcgcgcgcttcaggcggttctgccgccg
gcgacggatttcccctataccgtgcgtctggtgtccgagatcacggaatcgaacggttct
tcgtccatggcgtcagtctgtggcgggtcgctgtcgatgatggatgcgggcgtgccgctc
aagacatccgtggccggtgtggccatgggtcttgttctggaagaagacggctcttttgcg
atcctgtcggatattctgggggatgaagatcacctgggcgatatggatttcaaggtggct
ggcaccgcagacggtatcacctcgcttcagatggatatcaaggtcgcaggcattacacct
gagatcatgaaaaaggcgctggaacaggcgaaagccgggcgtttgcacatccttggtgaa
atgaacaaggcgctctcgggcgcggcagagttcagcgtacacgcaccgcgtatcgagacc
atgcagattcccaccgacaagatccgtgaagtcatcgggtcgggcggcaaggtgatccgc
gagatcgtcgaggtgtctggcgccaaggtcgatatcaacgacgaaggcatcattaagatc
gcatcgccgaacggagagtcgatcaagaaagcctatgacatgatctggtcgatcgtggcc
gagccggaagagggcaaggtctatgacggcaaggtcgtcaaacttgtggattttggcgct
ttcgtcaatttctttggcaagcgggacggtctggtgcatgtcagccagatcgagaaccga
cgcctgaaccatccgagcgatgtgctcaaggaagggcaggacgtaaaggtcaaactcttg
ggctttgacgatcgcggcaaggtgcgtctgtcgatgaaagttgtcgatcaggtcactggc
gaagaaatcgtgcctgagaagggtgaaaaagaagccgagtaa
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