Roseovarius sp. AK1035: RAK1035_3344
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Entry
RAK1035_3344 CDS
T05517
Name
(GenBank) Metallo-beta-lactamase family protein, RNA-specific
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rok
Roseovarius sp. AK1035
Pathway
rok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RAK1035_3344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rok03019
]
RAK1035_3344
Messenger RNA biogenesis [BR:
rok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RAK1035_3344
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AWZ22051
LinkDB
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Position
complement(3454362..3456029)
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AA seq
555 aa
AA seq
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MSSERLIYLPLGGAGEIGMNAYVYGYGKPGKERLILVDLGVTFPDMDGTPGVDLILPDIS
WLEARKGQLEAIFITHAHEDHVGAVAHYYARLGAPIHARAFTANIARRKMQEHGNPEKAV
HIASTWPATVKAGPFTVGFVPISHSIPESSGLVIDSAGGRIVHTGDFKIDVNPVVGEPFD
RDLWASLSEPGVKALVCDSTNVFSHHEGRSESTVGGPITDLVAASKGLFVCTTFASNVAR
VKSLAEAGVRAGRSVCLMGRAMQRMIEAAQETGVLTGFPKTISPEEAGNVPRDSLMLIVT
GSQGERRAASAQLANGKYNGITLKEGDTFLFSSKTIPGNERGVIRIINQFSEMGVDVIEG
DDRYHVSGHANRPDLDEMHKLIKPQMVIPMHGEHRHLREHVKLANANRLKGVLAVNGMMI
DLSGNAPKVAEYIETGRTYLDGSVQVGAMDGVVRDRIRMALNGHVMVNVILDEEDEPLGD
PWVEIMGLAETGRSNAPLVDVLEEDLSQFMGRAGAKMLTNDDKLEEGLRRTARQSTQTEI
GKRPEVTVVISRLTA
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtgaacgactaatctacctgcccctcggtggggcgggcgaaatcggtatgaac
gcctatgtctacggctatggcaagccgggaaaggaacggctgatccttgtcgatctgggc
gtgacctttccggatatggacggcacgccgggcgtcgatctgatcctgccggacatctct
tggcttgaggcgcgcaaagggcagctagaggcgattttcatcactcacgcccatgaggat
cacgtgggcgctgtcgcgcattactatgcccgccttggcgcgccgatccatgcccgcgcc
tttaccgccaatatcgcgcgccgcaagatgcaggaacatggcaaccctgaaaaggcggtc
catatcgcctcgacctggcctgccaccgtcaaggccggtccctttaccgtgggtttcgtg
ccgatttcgcattccatcccagaaagctctggtctggtgatcgacagcgccggtgggcgg
atcgtgcataccggcgacttcaagattgacgtcaatccggtggtgggcgaaccctttgat
cgtgatctctgggccagcctgtccgagccgggggtcaaggcgctggtttgcgattccacc
aatgtcttcagccatcacgaaggccgttccgagagcaccgtgggcggcccgatcaccgat
ctggtcgcggcctccaaggggctgtttgtgtgcaccacatttgccagcaacgtcgcacgc
gtgaaatcgctggccgaggccggcgtgcgggccgggcgctctgtctgtctgatggggcgc
gccatgcagcggatgatcgaggcggcgcaggaaaccggcgtgctcaccggatttcccaag
accatcagcccggaagaggcggggaatgtcccgcgtgacagcctgatgctgatcgtcacc
ggctctcagggcgagcggcgcgccgccagtgcgcaactggccaatggcaaatacaacggc
attaccctcaaagagggcgatacgtttctgttctcctccaagaccattccgggcaatgag
cgcggcgtgatccggatcatcaaccagttctccgagatgggcgtcgatgtgatcgagggc
gacgaccgctatcacgtgtcgggccatgccaaccgtcccgatctggatgagatgcacaag
ctgatcaagccgcagatggtgatccccatgcatggcgagcaccggcatctgcgcgagcat
gtgaagctggccaatgccaaccggctcaagggggtgctggcggtcaacggcatgatgatc
gacctcagcggcaatgcgccaaaggtggccgaatatatcgagaccgggcgcacctatctg
gatggttcggtgcaggtcggcgcgatggatggcgtggtgcgcgaccgtattcgcatggcg
ctgaacggtcatgtcatggtcaatgtcatcctggatgaagaggatgaacccttgggtgat
ccttgggtcgagattatgggtctggcagaaaccgggcgctccaacgcgccgctggtcgat
gtgctggaagaggacctgtcgcagttcatgggccgggccggggccaagatgctgaccaat
gacgacaagctggaagaggggctgcgccggaccgcgcggcagagcacgcagaccgaaatc
ggcaagcggcccgaggtgacggtcgtcatcagccgcctcacggcgtaa
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