Roseovarius sp. AK1035: RAK1035_3533
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Entry
RAK1035_3533 CDS
T05517
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rok
Roseovarius sp. AK1035
Pathway
rok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RAK1035_3533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rok03019
]
RAK1035_3533
Enzymes [BR:
rok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RAK1035_3533
Messenger RNA biogenesis [BR:
rok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RAK1035_3533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
AAA_19
HEM4
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AWZ22240
LinkDB
All DBs
Position
complement(3639705..3641012)
Genome browser
AA seq
435 aa
AA seq
DB search
MNLFDEMGLPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPL
ITALMQAPGKPAPKTIRSLILAPTRELASQIRDALLPLVKDSPIKINLVVGGASINPQIK
RLEQGTDILVATPGRLLDLIDRRAVRLDAAHFLVLDEADQMLDLGFIHALRRIAGLLAAE
RQTMLFSATMPKQMEELAGSYLKHPKRVQVSPPGKAADKVTQEVHFVAKAAKPDLLIELL
AKHKSELALVFGRTKHGSDKLAKRLEQAGYSVAAIHGNKSQGQRERALKSFRDGHVKILV
ATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGRDGAAIAFCAPDEMGELKDI
QKVLGTTIPVASGRPWEVLPDPKSPKPATGRGGPRRRTGGGGGFSGGGQQGKPGAGGGRR
RKPGGGGGGARSNAA
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
ttgaacctatttgacgaaatgggcctgcctgctgctttggtgcgcaagctggccaacgaa
ggcatcaccgaaccgaccccgatccagacccatgcgatcccgcatgcgctgaacgggttt
gatgttctgggccttgcgcagaccggcaccggcaagaccatggcctttggcctgcctctg
attacggcgttgatgcaggcaccgggcaagcccgcgcccaagaccatccgcagcctgatc
cttgcaccgacgcgggaattggccagccagatccgtgacgcgttgttgccactggttaag
gacagcccgatcaagatcaatcttgtggtggggggtgcctctatcaatccgcagatcaag
cggttggagcagggcactgatattctggtggcgacgccggggcggttgcttgaccttatt
gaccggcgcgcggtgcgtctggatgcggcgcatttccttgtgctcgatgaggccgatcag
atgcttgatctgggctttatccatgcgctgcgccggattgcggggcttttggcggcggag
cggcagacgatgctgttttcggccaccatgcctaagcagatggaagagttggccggtagc
tatctcaagcatcccaagcgggtgcaggtcagcccgccgggcaaggccgctgacaaggtc
acgcaagaggtgcattttgttgccaaggccgccaagcccgatctgctgatcgagcttttg
gccaagcacaaaagcgaattggcgttggtctttggtcgtaccaagcatggctcggacaag
ttggccaagcggttggagcaggccggttacagcgtggcggcaatccatggcaacaagagc
caaggccagcgcgagcgcgcgctcaagtcgttccgtgacgggcatgtcaaaatccttgtg
gcgaccgatgtggcggcgcgaggtctggatattccggatgtcaaacacgtctataattac
gaattgccgaatgtgcctgacaactatgttcaccggatcggacggaccgcgcgggccggc
cgggacggggcggcgattgcattctgcgcgcccgacgagatgggcgagttgaaggatatt
caaaaggttctgggcacgacgatccccgttgcctcgggccgtccgtgggaagtgctgcct
gatccgaagtcgcccaagcccgccacggggcggggtggtccacggcgtcgcacaggcggc
ggtggcggattttccggcggtggccagcagggcaagccgggcgcgggcggtggtcgtcgg
cgcaagcccgggggcggcggtggtggcgcgcggtcgaacgcagcctga
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