Roseovarius sp. AK1035: RAK1035_3809
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Entry
RAK1035_3809 CDS
T05517
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rok
Roseovarius sp. AK1035
Pathway
rok02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rok00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RAK1035_3809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rok03021
]
RAK1035_3809
Transcription machinery [BR:
rok03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RAK1035_3809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
Motif
Other DBs
NCBI-ProteinID:
AWZ22514
LinkDB
All DBs
Position
complement(3934577..3936562)
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AA seq
661 aa
AA seq
DB search
MAAKDTDDDKPEEAEAEVSLDMSQAAVKRMIAEAREKGFITYDQLNEVLPPDQVSSEQIE
DVMSMLSEMGINIIEAEDAEEEEGRSTAVAEIGRRGEITLGSGKEEKLDRTDDPVRMYLR
EMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLGEDILLRDVID
LEATFGTQLGDEDAEPVVGAANVTSAPGGMGRDDSEPDLDADGNPIHSDDDDEDDEQANM
SLAAMEAALKPRVLDTLDRIAADYAKLSEMQDSRISATLNEDGSFSREQEATYQTLRSEI
VELVNELHLHNNRIEALIDQLYGINRRIMQIDSAMVKLADQARINRSEFIEEYRGRELDP
NWLDDMARKAGRGWQMFIERSPEKVAELRADMAQVGQYVGLDISEFRRIVQQVQKGEKEA
RQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT
WWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLE
KVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNVILPLDSAIQDNLKETTTRVLSSLT
PREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD
Q
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagataccgacgacgataagccagaggaagccgaagccgaggtttcgctc
gacatgagccaggcggcggtcaagcggatgatcgcggaggcgcgggaaaagggctttatt
acctatgaccagctgaacgaggttttgcccccggatcaggtgtcgtcggaacagatcgaa
gacgtgatgtcgatgctctcggagatggggatcaacatcatcgaggccgaggatgcggaa
gaggaagaggggcgttcgaccgccgttgccgagatcgggcgacggggcgagatcaccctt
ggctcgggcaaggaagaaaagctcgaccgtacagatgacccggtgcggatgtatctgcgc
gagatgggatctgtcgagcttttgagccgtgagggcgagattgccatcgccaagcggatc
gaagccgggcgcaacacaatgatcgcaggtctctgcgaaagcccgctgacctttcaggcg
attaccatctggcgcgacgaacttttgggtgaagacatcctgttgcgcgatgtgatcgac
cttgaggccacgtttggcacgcaattgggcgacgaagacgccgagccggtggtgggggct
gccaatgtgaccagcgcccccggcggtatggggcgtgatgacagtgagcctgatctggat
gccgatggcaatccgatccattccgacgacgatgacgaggacgacgaacaggccaatatg
agccttgcggcgatggaagccgcgctcaagccgcgcgttctggatacgctggaccggatc
gcggcggattatgccaagctgagcgagatgcaggatagccggatttcggccacgctgaac
gaggatggatcgttcagccgcgagcaggaagccacctatcagaccctgcgcagcgagatt
gtcgagctggttaacgagctgcatctgcacaacaaccggatcgaggcgctgattgatcag
ctttacggcatcaaccgccggatcatgcagatcgactctgccatggtcaaactggccgat
caggcgcgtatcaaccgttctgaattcattgaagaatatcgcggtcgcgagcttgatccc
aactggttggacgatatggcccgcaaggccgggcgcggctggcagatgttcattgagcgc
agccctgaaaaggtagccgagttgcgcgccgacatggcgcaggtggggcagtatgtgggt
ttggacatttccgaattccgccgcatcgtgcagcaagtgcagaagggcgagaaagaggcg
cgccaagccaagaaggaaatggtcgaagccaacctgcgtctggtgatttcgattgccaag
aaatacaccaaccgtggcctgcaattccttgatcttattcaggaaggcaatattggccta
atgaaggcggtggataagttcgagtatcgccggggctataaattcagcacctatgcgacc
tggtggatccgtcaggcgatcacccgctcgatcgcggatcaggcgcgcaccatccggatt
ccggtgcatatgatcgagacgatcaacaagctggtgcgcacgggtcgtcagatgctgcac
gagattggccgcgaaccgacgcccgaggaactggccgaaaagctgcaaatgccgctggaa
aaggtccgcaaggtgatgaaaatcgccaaggagccgatttcgctcgagacgccgattggc
gacgaggaagacagccagcttggtgatttcattgaggataaaaacgttattcttccgttg
gatagcgctattcaggacaacctcaaggaaaccacgacacgggttctgtcatcgctcaca
ccgcgcgaagagcgggtgttgcggatgcggtttggtatcggcatgaacaccgatcatacg
ctggaagaggtggggcaacagttctctgtcacccgcgaacgtatccggcagatcgaagcc
aaagcgctgcgcaagctgaagcatccgagccggagccgcaagctgcggagttttctggat
caatga
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