Rosistilla oblonga: CA51_29380
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Entry
CA51_29380 CDS
T06941
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rol
Rosistilla oblonga
Pathway
rol02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rol00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CA51_29380 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rol03021
]
CA51_29380 (rpoD)
Transcription machinery [BR:
rol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CA51_29380 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
KORA
HTH_25
TY-Chap3
HTH_10
Rv2175c_wHTH
Motif
Other DBs
NCBI-ProteinID:
QDV13052
LinkDB
All DBs
Position
complement(4015159..4016181)
Genome browser
AA seq
340 aa
AA seq
DB search
MIIALNKFPGFQVATKPLFDWFDSDGIAAIIDQVGDVESLRRAPMSQVNREKQRLLSQEI
EFIDNPRFYEAGAGERLFDVAIDLQRTSESKRSFGEGLPTHLDRLCTASLLGPENEPLLF
ERMNFLLCMAEQCRKRLAYTKTVVQEIDRIHWLLALAAWHRDRIIEANLRLVFSIVKKFV
NPMNTFDDLLADGMLALIRAVEKFDYSRGFRFSTYATQVVRRNSYQLVVQRQTDDSRLVV
GLDEAGIAESGVPREPFMSEQRWHSLRARLGELLDMLDRREKLIIRARFSIGPHSKVQTL
QAIASRLGISKERVRQIESRAIAKLQEMAAGAEVPELTGA
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgattattgctttaaataagtttcccggctttcaagtcgcaacgaagccgttgttcgat
tggtttgactccgatgggatcgcggcgatcatcgatcaggtgggcgatgtggaaagtctg
cggcgagcgccgatgtcgcaggtcaatcgggaaaagcagcggctgttgagccaagagatc
gagttcatcgacaacccgcggttttacgaagctggcgccggggagcgattattcgacgtc
gcgatcgacctgcagcggacctccgaatcaaaacggagtttcggtgaggggttgcctacg
catttggaccggttgtgtaccgccagtttgctgggtccagagaacgagccgttgttgttc
gaacggatgaattttctactgtgcatggcagagcagtgccgcaagcggcttgcctacacc
aagacggtcgtccaagagatcgatcgcattcattggttgttggcacttgccgcgtggcac
cgtgatcggatcatcgaagcgaatctgcgattggtcttttcgatcgtaaagaagtttgtc
aatccgatgaacactttcgacgacttgttggccgacggaatgctggcattgatccgagcg
gttgagaagttcgattattcgcgcggcttccgattcagcacctacgcgacgcaagttgtc
cgccgcaattcctaccaattggtcgtgcaacggcaaaccgacgattcgcgattagtcgtc
ggtctcgatgaggcggggatcgccgaatcgggtgtgcctcgcgagcccttcatgtccgaa
cagcggtggcattcgcttcgcgctcggcttggggagctgttggacatgctggaccgccgg
gagaagctgatcattcgcgcacggttttcgatcggtccgcacagcaaggtgcagacgctg
caggctatcgcatcgcgtctggggatctccaaggaacgagtccgccagatcgaatcgcgg
gcgatcgccaagcttcaggaaatggccgctggtgcggaagttcccgaactcacgggtgcg
taa
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