Rosistilla oblonga: CA51_31460
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Entry
CA51_31460 CDS
T06941
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rol
Rosistilla oblonga
Brite
KEGG Orthology (KO) [BR:
rol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rol03016
]
CA51_31460 (rtcB)
Enzymes [BR:
rol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CA51_31460 (rtcB)
Transfer RNA biogenesis [BR:
rol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CA51_31460 (rtcB)
Prokaryotic type
tRNA splicing ligases
CA51_31460 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
QSOX_Trx1
Motif
Other DBs
NCBI-ProteinID:
QDV13258
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All DBs
Position
4304383..4305780
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AA seq
465 aa
AA seq
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MKTRELNNLGIPKGIAMQAAVEAVRNASAKGLKRPELRTAIAAIVEDPASAKDDPLWGSL
ADALQTVFSAQDRYIGRDEPAPWRQWGDGLEAGAVSQMVDACKLPVTVSGALMPDAHLGY
GLPIGGVLATKDCVIPYAVGVDIACRMKMTVLDMPVETLDTNQDRLRNAIERETQFGIGA
SFRKRRQHEVMDADWRVSPITFQNKDKAWKQLGTSGSGNHFVEFGVLTLPAGDLGLAAGT
YLALLSHSGSRGTGASICAHYSSVAKATHPELPRELQNLAWLNLDTQEGQEYWNAMNLMG
EYAAANHACIHREIASHLGVEVLLDVENHHNFAWRESHGGEDLIVHRKGATPAGQGVLGI
IPGSMGTPGYVVRGKGVEESLLSAAHGAGRRMSRTAAKKQFRWKEVKKFLNDRGVTLMSA
GLDEVPMAYKDIDQVMASQHDLVETVARFDPRLVKMAEAGERPED
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgcgtgaactgaacaacttgggaattccaaaagggatcgcgatgcaagcggct
gtcgaagcggtccgcaacgcgtcggccaagggactcaaacgacctgaattgcgaaccgcg
atcgcggcaattgtcgaagaccccgcgtcggcgaaggacgatcctctttggggatcgttg
gccgatgctttgcagaccgtcttctcagctcaagaccgttacatcggtcgcgacgaaccc
gctccctggcgtcagtggggtgacggtctggaagcgggtgcggtgtcgcagatggtcgac
gcttgcaagctgccggtgaccgtatcgggtgcgttgatgcccgacgcgcacttgggttat
ggcctgccgatcggtggcgtgctggcgacgaaggactgcgtgattccttacgctgtcggc
gtcgatatcgcctgtcggatgaagatgaccgttttggacatgcctgtcgaaacgctcgat
accaatcaagatcgattgcgaaacgcgatcgagcgggagacgcagttcgggatcggtgcg
agtttccgcaaacggcggcaacacgaggtgatggatgccgattggcgcgtctcgccgatc
acattccagaacaaggacaaggcgtggaagcagttgggaaccagcggcagcggaaaccac
ttcgtcgagtttggcgtcctgacgctgccggcgggcgatctgggattggcagccggaacg
tacttggcgcttttgagtcacagcgggtcgcggggaacgggagcatcgatttgcgcgcac
tacagcagcgtggccaaagcgacgcacccggaactgccacgcgaactgcaaaaccttgcc
tggttaaacttagatactcaggagggccaagagtactggaacgcgatgaatttgatgggg
gaatacgcggcggcgaaccacgcttgcatccaccgtgaaatcgcaagccacttgggagtc
gaagtcttgttggatgtcgagaaccatcacaactttgcctggcgagaatcgcatggcgga
gaggatctgatcgtccaccgcaagggagcgactccagcgggccaaggcgtgttgggaatc
atccccggttcgatgggaactcccggatacgtcgtccgcggaaaaggagtcgaagagtcg
ctgttgagcgctgcgcacggcgcggggcggcggatgagtcgcaccgcggcgaagaagcag
ttccgatggaaagaggtgaagaagttcttgaacgatcgtggcgtgacgttgatgtcggcc
gggctggacgaagtcccgatggcctacaaagacatcgaccaagtgatggcgtcgcagcac
gacctggtcgagaccgtcgcccgcttcgatccgcgtttggtcaagatggccgaggcgggc
gagcgaccggaggactaa
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