Rosistilla oblonga: CA51_39240
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Entry
CA51_39240 CDS
T06941
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rol
Rosistilla oblonga
Pathway
rol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CA51_39240 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rol03021
]
CA51_39240 (rpoC)
03400 DNA repair and recombination proteins [BR:
rol03400
]
CA51_39240 (rpoC)
Enzymes [BR:
rol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CA51_39240 (rpoC)
Transcription machinery [BR:
rol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CA51_39240 (rpoC)
DNA repair and recombination proteins [BR:
rol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CA51_39240 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QDV14031
LinkDB
All DBs
Position
5355439..5359779
Genome browser
AA seq
1446 aa
AA seq
DB search
MSNGESTTYDRINDYASVKINLARPQDIRGWSFGEVKKPETINYRTYRPEKDGLFCERIF
GPEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPIVHIWFFKAMPS
RLGNLLSMKTTSLEKVIYFQDYVVVDPGQTDLELQQMLTEEEYRAAKAQWGDNAFEADMG
AEAVRKLLGKLDLVALSEKLRVDLEETGSKQKAKDLINRLKIVESIRDSDNRPEWMVLDV
IPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLRKLVDLNAPEVIIRNEKRMLQQ
SVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPRL
KLHQCGLPKKIALELYQPFIIRKLKELGHADTIKSAKKMLERKDEEVWDILETVIRNHPV
MLNRAPTLHRMGIQAFEPTLVEGNAINLHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAH
TLMLSTNNIFAPSNGKPIMSPSQDMVMGCYFITVELPDQKGEGMTFSCAEEAEMAYREGV
IALHAKIRVRLPKYRKIKTADDSAKGGQIIDTTYGRIMFNEMLPLGMDYYNQAMRSGDLA
SAISDTYQRLGRKATIQVLDDMMQLGFRESTRSGLSFATDDLVTPDSKVKFIAEAEKEVM
KQRKNYDRGLITGDERYKKVLDTWTGAREKITTDMMHAMEHDFRPGGWYVNPVYLMAHSG
ARGGIEQIRQLGGMRGLMAKPSGEIIETPIKANFREGLTVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADVAQNVVITMEDCGTTQGITKNVIYRGEKVEVRLADSINGRVSRQNIV
DPITDEVIVRESEMITPEIARKIEEMGLEKIQVRSPMTCDAPLGICRRCYGMDMATGSLV
EEGMAVGIIAAQSIGEPGTQLTMRTFHIGGSVDVAMEDSDIRAQKGGFVRLTRLRAVINE
DGQLVALTRNGEIAVVDDRGREIEKHEVPTGATLPVKDGEEVKAGAILCEWNPHSVPILA
EVDGKVRFDDIVEGETMKLEREASGNMRMTIMEHKGELHPQIVIEDATGATLNVQYLPER
AVIKIKEGTQIKTGSALAEMPRESGGVSDITGGLPRITEIFEARKPKEPAVIAEVDGTVE
ILAEKKRGKRTIVVRSESGIEREHLVPHGKRFLVHTGDIVRAGQALIDGPLVPHDILRVS
GEEAVQQYLLHEVQQVYRSQRVEINDKHVEIIIARMLRKVKIESSGNTSILPGLVMDRFE
FRRANQSMAKCVKISDKGDSDFAESSIIPKETFEQTNAEIEALGGSPARGKKPRGATAST
QLLGITKASVQSSSFISAASFQETTKVLTEAALAGKVDRLVGLKENVILGHLIPAGTGFR
IFQDSEVSYRREAMEELAGTAPQQLEESFPLLADGAPPADDSGSQATPPASVQTLDSLLG
GGKTDE
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacggcgaaagcaccacttacgaccgcatcaatgattacgcctcggtcaagatc
aacctggcccgcccgcaagacatccgcggctggtcgtttggtgaggtcaagaagccagag
acgatcaactaccgtacctaccgtcccgagaaggatggtctgttttgcgagcggatcttt
ggccctgaaaaggactgggagtgcgcatgcggtaaataccgcggcatgaaatacaaggga
atgatctgcgatcgctgcggtgtgaaagtcacgcacagccgcgttcgtcgtaagcgcatg
ggccacatcgaattggctgcgccgatcgttcacatctggttcttcaaagcgatgcctagc
cgcttgggcaacctcttgagcatgaagacgaccagcctggaaaaggtgatctacttccag
gactacgtcgttgtcgatccaggtcaaaccgacctcgaactgcaacagatgctgaccgaa
gaagagtatcgcgccgccaaggctcagtggggcgacaacgccttcgaagccgatatgggc
gccgaagctgtccgcaagctgttgggcaaactcgatctggtcgcgctgtcggaaaaactg
cgcgtcgatctcgaagagaccggcagcaagcagaaagccaaagacctgatcaaccgcttg
aagatcgtcgaatcgatccgcgacagcgacaaccgtcccgaatggatggtcctggacgtg
atccccgtgatcccgcccgacctgcgtcctctggttctgttggacagcggcaacttcgcg
accagcgacttgaacgacctctatcgccggatcatcaaccgcaacaaccggttgcgtaag
ttggtcgatctgaacgcgcctgaagtgatcattcgcaacgaaaagcggatgttgcaacaa
tcggtcgacgcgctgttcgacaacaaccgttgcaagcgtccagtcctgggcagcagcaat
cgtccgctgaaatccttgaccgacatgatcaagggtaaacagggtcgtttccgtgaaaac
ctgctgggtaaacgcgtcgattattccgctcgttcggtaatcgtcgtcggtcctcgtctg
aagttgcaccaatgcggacttcccaagaagatcgcgttggaactgtaccaaccgttcatc
attcgcaagctgaaagagctgggtcacgccgacacgatcaaatcggcgaagaagatgctc
gagcgaaaagacgaagaggtttgggatatcctggaaaccgtcatccgcaaccacccggtg
atgttgaaccgggctcctacgttgcaccggatgggtatccaggcgttcgaaccaaccttg
gtcgaaggtaacgcgatcaacctgcacccgctggtttgcaaaggcttcaacgccgacttc
gacggcgatcagatggcggtccacttgccgctttcgatcgaggcacaagtcgaagcgcac
acgttgatgttgagcacaaacaacattttcgcgccgtccaatggtaagccgatcatgagt
ccgtcgcaggacatggtcatgggttgctacttcatcacggtcgagctgcccgatcaaaag
ggcgaaggcatgaccttcagctgtgccgaagaagccgagatggcttatcgcgaaggcgtt
atcgcgctgcacgcgaagattcgcgtacggttgccgaagtatcgcaagatcaagacggct
gacgattccgccaagggtggtcagatcatcgacaccacctacggtcgcatcatgttcaat
gagatgctgccgctgggcatggactactacaaccaagccatgcgttcgggcgatctcgcc
tcggcgattagcgatacctaccaacgtctgggtcgtaaagcgacgatccaagtgttggat
gatatgatgcagctcggcttccgtgaatcgactcgtagtggtttgtcgtttgcgaccgat
gatctggtaactcccgattcgaaggtcaagttcatcgccgaagctgaaaaagaggtgatg
aagcaacgcaagaactacgatcgcggtttgatcaccggcgacgagcggtacaagaaggta
ctcgatacctggaccggtgctcgtgaaaagatcacgaccgacatgatgcacgcgatggaa
cacgatttccgtcccggcggttggtatgtgaaccctgtatatttgatggcccactccggt
gctcgtggtggtattgaacagattcgtcagctgggcggtatgcgtggtctgatggcgaag
ccgtcgggtgagatcatcgagacgccgattaaggcgaacttccgtgaaggtctgacggta
ctggaatacttcagttcgacgcacggtgctcgtaagggtctggccgatacggcgttgaag
acagctgactcgggttacctgacacgtaagctggccgacgtcgcccaaaacgtggtcatc
acgatggaagactgcggcacgacccaaggtatcaccaaaaacgtgatttaccgtggtgaa
aaggtcgaagtacgcttggccgacagcatcaacggtcgcgtcagtcgccagaacatcgtc
gatccgatcaccgacgaagtaatcgtccgcgaaagcgaaatgatcactccggagatcgct
cgcaagatcgaagagatgggtctggagaagatccaagtccgcagcccgatgacctgcgat
gcaccgctgggtatctgccgccgttgttacggtatggatatggcgaccggatcgttggtc
gaagaaggcatggccgtcggtatcatcgctgctcaatcgatcggtgaacctggtacacag
ttgacgatgcgtacgttccacatcggtggttcggtcgacgtcgcgatggaagatagcgac
atccgcgctcagaagggtggattcgttcgcttgactcgcttgcgtgcggtcatcaacgaa
gacggccagttggtcgcgttgacacgtaacggtgaaatcgcggttgtcgatgatcgcggt
cgcgagatcgaaaagcacgaagtaccaaccggtgcaacgctgcctgtgaaggatggcgaa
gaggtcaaagccggtgcgatcctttgcgaatggaacccgcacagcgtgccgattctcgcc
gaggtcgacggtaaggttcgcttcgacgatatcgtcgaaggcgaaacgatgaagctggaa
cgcgaagccagcggtaacatgcgtatgacgatcatggaacacaagggtgaacttcacccg
cagatcgtgatcgaagacgccaccggcgcgacgctgaacgttcaatatctgcccgaacgt
gctgtgatcaagatcaaggaaggtactcagatcaaaaccggttcggctctggcggaaatg
ccgcgtgagtcgggcggtgtatcggacatcaccggtggtctgcctcggattaccgagatc
ttcgaagctcgtaaaccgaaggaacccgcggttatcgccgaggtcgacggtaccgtcgaa
atcctggctgagaagaaacgcggtaagcgaacgatcgtcgtccgcagcgaaagcggtatc
gaacgcgagcacttggtgcctcacggtaagcgattcttggtccacaccggcgacatcgtc
cgcgctggtcaggccctgatcgacggtccgttggttccgcacgatatccttcgcgtctcg
ggtgaagaagcggttcaacagtacctgctgcacgaagtccaacaggtctatcgttcgcag
cgtgtggagatcaacgataagcacgtcgagatcatcatcgcacggatgttgcgtaaggtg
aaaatcgaatcgtccggtaacaccagcatcctgcctggcttggtaatggaccgcttcgaa
ttccgtcgcgccaaccaatcgatggccaagtgcgtcaagatcagcgataagggcgatagc
gatttcgccgaatcgtcgatcattccgaaggagacgttcgaacagaccaacgcggaaatc
gaagctctgggcggttcgccggcccgaggcaagaagccgcgtggtgcaaccgcgagtact
cagttgttgggtatcacgaaggcatcggtccaatcgagcagctttatctcggcggcgtcg
ttccaagaaacgaccaaggttctgaccgaagcggctttggccggcaaggtcgaccgcttg
gttggtttgaaggaaaacgtgatcctgggtcacttgatccccgctggtaccggtttccgc
attttccaagattcggaagtcagttaccgccgcgaagcgatggaagaactggccggaacc
gcaccgcaacaattggaagagagcttcccattgttggccgatggagctccgcccgccgac
gacagcggatcccaagcgacccctccagcgagcgtccaaaccttggacagcctgttgggc
ggcggcaaaacggacgaatag
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integrated database retrieval system
