Roseovarius faecimaris: EI983_08020
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Entry
EI983_08020 CDS
T06338
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rom
Roseovarius faecimaris
Pathway
rom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI983_08020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rom03019
]
EI983_08020
Enzymes [BR:
rom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EI983_08020
Messenger RNA biogenesis [BR:
rom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EI983_08020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SUa-2TM
AAA_22
ERCC3_RAD25_C
Utp25_C
CMS1
HEM4
Motif
Other DBs
NCBI-ProteinID:
QGY00342
UniProt:
A0A6I6IXQ1
LinkDB
All DBs
Position
1557805..1559049
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AA seq
414 aa
AA seq
DB search
MGLPGPLVKKLTAQGISEPTPIQSHAIPHALDGHDIMGLAQTGTGKTLAFGLPLVAGLME
QRGKPAPKTVRSLILAPTRELVGQIKDALIPLVAGTPIKVGMVVGGVGINPQINRLARGL
DVLVATPGRLLDLLDRGALTLDQTRFLVLDEADQMLDLGFIHALRKIAGLLPAERQTMLF
SATMPKQMEEIAASYLTHPKRVQVSPPGKAADKITQCVHFIAKAEKPNLLIELLDAHRDE
LALVFGRTKHGSDKLARRLEQAGYAVAAIHGNKSQGQRERALKAFRDGEVTVLVATDVAA
RGLDIPDVKHVYNYELPNVPENYVHRIGRTARAGRDGMAVAFCAPDEMGELKDIQKVMKL
TIPVASGRAWEELPDPTAKPQGRKGPARGAKPGGGPRRRRRRGGGGGGSRAKAA
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgcccggcccgctggtaaagaaactgaccgcccagggcattagcgagccgacc
ccgatccagagccatgccatcccgcatgcgctggacgggcatgacatcatgggtctcgca
cagaccggcaccggcaagaccttggcctttggcctgccgcttgtcgccgggctgatggag
cagcgcggcaaacccgcgcccaaaaccgtgcgcagcctgatccttgcccccacgcgcgag
ctggtggggcagatcaaggacgcgttgatcccgctcgtggcgggcacaccgatcaaggtc
ggcatggtggtcggcggtgtgggcatcaacccgcagatcaaccgtctggcccgggggctc
gatgtgctcgtggccacgccgggccggttgctcgatctgctggaccggggcgcgctgacg
ctggatcagacgcgttttctggtgctggacgaggccgaccagatgctcgacctcgggttc
atccatgcgctgcgcaagatcgcgggcctgctgcccgccgaacgccagacgatgctgttt
tcggccaccatgcccaaacagatggaagagatcgcggcaagctatctgacccatcccaag
cgcgtgcaggtgtcgccgccgggcaaggctgcggacaagatcactcaatgcgtccacttt
atcgccaaggctgaaaagccgaatttgctgatcgagcttctggacgcgcatcgcgacgag
ctggcgctggttttcggccgcacgaaacacggttcggacaaactggcgcgcaggctggag
caggcgggctatgcggtcgccgcgatccatggcaacaagagccagggtcagagggagcgc
gcgctgaaggcattccgcgacggcgaggtgacagtgctggtggccacggatgtggccgcg
cgggggctggatatcccggatgtgaagcatgtctacaattacgagctgccgaatgtgcct
gaaaactatgtgcaccggatcggccgcacggcgcgggccggccgcgacggtatggcggtg
gctttctgcgcgcccgacgaaatgggtgaactgaaagacattcagaaagtgatgaaactc
acgatccctgtggcctccggccgtgcctgggaagagttgcctgaccccacggccaaaccg
cagggccgcaaagggcccgcacgcggcgccaagccgggtggggggccgcgcaggcggcgg
cgtcgcggcggtggcggcggcggttcccgcgccaaggcagcctag
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