Roseovarius faecimaris: EI983_14180
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Entry
EI983_14180 CDS
T06338
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rom
Roseovarius faecimaris
Pathway
rom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EI983_14180 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rom03021
]
EI983_14180 (rpoC)
03400 DNA repair and recombination proteins [BR:
rom03400
]
EI983_14180 (rpoC)
Enzymes [BR:
rom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EI983_14180 (rpoC)
Transcription machinery [BR:
rom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EI983_14180 (rpoC)
DNA repair and recombination proteins [BR:
rom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EI983_14180 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
DUF7567
Motif
Other DBs
NCBI-ProteinID:
QGX99347
UniProt:
A0A6I6IV03
LinkDB
All DBs
Position
2817980..2822224
Genome browser
AA seq
1414 aa
AA seq
DB search
MNQELTNNPFNPVAPTKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPCAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLSYGQMLSEEEFMDAQDAYGMDAFT
ANIGAEAIREMLQNIDLEAEAENLRAELAEATGELKPKKIIKRLKVVESFLESGNRPEWM
VMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGMSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYTTIMREGMKGEGMVFSSVEEVQHAL
DAGEVHMHAKVTVRMSQIDEEGNEVFKRFETTPGRARLGALMPKNSKAPFDLVNKLLRKK
EVQNVIDTVYRYCGQKESVIFCDQIMGMGFKEAFRAGISFGKDDMVIPDNKWTIVDETRD
QVKGFEQQYMDGLITQGEKYNKVVDAWSKCNDQVTEAMMGTISAEKTDENGAVMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVREHDCGTDRAITAEAAVSDGEVVASLAERILGRV
TADDVLNPADDSLILRAGELIDERMADAIEEAGVQSMRIRSPLTCEAEDGVCAMCYGRDL
ARGTMVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQEGTIAFENAQ
LLENANGEILVMGRNMKLKIMGEKDVELASHKVGYGSKLFVKEGAKVSRGDKLFEWDPYT
LPILAEKSGTAKFVDLVSGIAVRDVTDDATGMTQKIVMDWRAAPKGNELKPEILVVGSDG
EPVRNEAGNPVTYPMSVDAILSVEDGQDIHAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRYGRDYKNKRRISIEPVDDSLEPVEYMVPKGKHIPVQEGDYVQ
KGDYIMDGNPAPHDILSIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVVVRQMLQKWE
ILDSGDTTLLKGEHVDKAEFDAANEKAIAKGGRAAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQKMRHIAQQRDNVVIEARRE
EAEAAAALAAPMDDDIIGGDEFDTLVETPESRED
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgttcaacccggtggctcccaccaaggtgtttgac
gaaatcaaggtctcgctggcctcccctgagcgtatcctcagctggtcctatggcgagatc
aagaagcccgagacgatcaactaccgcacgttcaagcccgagcgtgacggcctcttctgc
gcgcgtatctttggcccaatcaaggattacgaatgcctttgcggcaaatacaagcggatg
aagtaccgcggcgttgtctgcgagaaatgcggtgtggaagtcacgctgcaaaaggtccgc
cgcgagcgtatgggccatatcgaactggccgccccttgcgcgcacatctggttcctcaag
tcgctgccttcgcgcatcggcctgatgctggacatgactctgcgcgatcttgagcgggtg
ctctacttcgagaactatgtggtgatcgagccgggtctgaccgacctgagctatggccag
atgctctcggaagaagagttcatggacgctcaggacgcctatggcatggatgcctttacc
gccaatattggcgccgaagccatccgcgagatgctccagaacatcgatctggaagccgag
gccgaaaacctgcgcgccgaactggccgaagccacgggcgagttgaaacccaagaagatc
atcaagcgcctgaaggtggttgaaagcttcctggaatccggcaaccgcccggaatggatg
gtcatgaccgtgatcccggtgatcccgcccgaactgcgcccgctggtgccgctggacggg
ggccgctttgccacgtcggatctcaacgatctctatcgtcgcgtgatcaaccggaacaac
cgcctcaagcggctgatcgagctgcgcgcgcccgatatcatcgtgcgtaacgaaaagcgg
atgctgcaggaatcggtcgatgccctctttgacaacggtcgtcgtggccgcgtcatcacc
ggcgccaacaagcgcccgctgaagtcgctttccgacatgctgaaaggcaagcagggccgg
ttccgtcagaaccttctgggtaagcgggtcgacttctcgggccggtcggtcatcgtgacc
gggccggaactgaagctgcaccaatgcggcctgcccaaaaagatggcgctcgagctgttc
aagccgttcatctattcgcggctggaagccaagggcatgtcctcgacggtcaagcaagcc
aagaaactggtcgagaaagaacgccccgaagtgtgggatatcctcgatgaggtgatccgc
gagcacccggttctgctgaaccgcgcgccgacgctgcaccgcttgggcattcaggcgttt
gagcccgtgctgatcgaaggcaaggccattcagctgcacccgctggtctgttcggccttc
aacgccgacttcgacggtgaccagatggccgtgcatgtgccgctgtcgctcgaagcccag
ttggaagcacgcgtgctgatgatgtcgacgaacaacgttctgtcgccggccaacggtgca
ccgatcatcgtgccgtctcaggacatggttctcgggctctattacaccaccatcatgcgc
gaaggcatgaagggcgaaggcatggtcttctcctcggtggaagaggtccagcatgcgctc
gacgccggcgaggtgcatatgcacgccaaagtcaccgtgcggatgagccagatcgacgaa
gaaggcaacgaggtgttcaaacggtttgagaccacgccgggccgtgcccgccttggggct
ctgatgccgaaaaactccaaagcgcccttcgatctggtcaacaagcttctgcgcaagaag
gaagtgcagaacgtgatcgacacggtctatcgctactgcggtcagaaggagagcgtgatc
ttctgcgaccagatcatgggtatgggcttcaaggaagcgttccgcgccgggatttccttt
ggcaaggacgacatggtgatcccggataacaagtggaccatcgtggacgagacccgcgat
caggtgaaaggcttcgaacagcagtatatggacggcctgatcacccagggcgagaagtac
aacaaagtggtcgatgcctggtcgaaatgtaacgaccaggtgaccgaagccatgatgggc
acgatctcggctgagaagacggacgaaaacggcgccgtgatggagccgaactcggtctac
atgatggcgcactccggtgcccgtggctcggtcacgcagatgaaacagctgggcgggatg
cgcggcctgatggccaagccgaacggcgacatcatcgaaacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgacccacggcgcccgtaagggtctg
tcggacaccgctctgaaaacggcgaactcgggctacctgacccgccgtctggtggacgtg
gcgcaggactgcatcgtgcgcgagcatgattgcggtactgaccgtgcgatcaccgcagaa
gcggccgtgagcgacggtgaggttgtcgcctcgctggctgagcgcatcctgggccgggtg
acggcggatgacgttctgaaccctgccgatgacagcctgatcctgcgcgccggtgagctc
atcgacgagcgtatggccgacgcgatcgaagaggcgggcgtgcaatccatgcgcatccgc
agcccgctcacctgtgaggccgaggatggcgtttgcgccatgtgctatggccgtgacctt
gcacgcggcaccatggtgaaccagggcgaagcggttggcattatcgccgcccagtccatc
ggggagccgggcacgcagctgacgatgcggacgttccacatcggcggtgtggcgcagggt
ggccagcaaagcttcctcgaagcgagccaggaaggcaccatcgccttcgaaaacgcgcag
cttctggaaaacgccaatggcgagatcctggtcatgggccgcaacatgaagctcaagatc
atgggtgaaaaggatgtggaactggccagccacaaggttggctatggctcgaagctgttt
gtcaaagagggcgcgaaagtgtcccgcggcgacaaactctttgagtgggatccctacacc
ctgccgatcctggccgagaaatcgggtactgcgaaattcgtggacctcgtgagcggcatt
gccgtgcgcgatgtgaccgacgatgccaccggcatgacccagaagatcgtgatggactgg
cgcgcggcccccaagggcaacgagctcaagcccgagatcctggtggtcggctctgatggc
gaaccggtacgcaacgaagcgggcaaccccgtgacctacccgatgtcggtggatgcgatc
ctgtcggtcgaagacggtcaggacatccatgctggtgacgtggtcgcgcgtattccgcgc
gaaggtgccaagaccaaggacatcaccggtggtctgccgcgtgtggctgaactctttgag
gcgcgtcgccccaaggatcacgccatcatcgccgagatcgacggctatgtccgctatggt
cgcgactacaagaacaagcgccggatcagcatcgagcctgtcgatgacagcctggagccc
gtcgaatacatggtgcccaagggcaagcacatccccgttcaggaaggggattatgtccag
aaaggcgactatatcatggacggcaaccccgcgccgcatgacatcctgagcatcatgggt
gtcgaggcgctggccgattacatgatcgatgaggtgcaggatgtctatcgtctgcagggc
gtgaagatcaacgacaagcatatcgaggttgtcgtgcgccagatgctgcagaaatgggaa
atcctcgacagcggcgacaccacgcttctgaaaggcgagcacgtggacaaggccgagttt
gatgccgcgaacgagaaggcgattgccaaaggcggccgtgccgcccagggcgagccgatc
cttctgggtatcaccaaggccagcctgcaaacgcggtcgttcatctcggcggcttcgttc
caggagaccacccgcgtgctgaccgaagcctcggtacaaggcaagcgcgacaagcttgtc
ggcctgaaggaaaacgtcatcgttggccgcctgatccctgccgggaccggtggtgccacg
cagaagatgcgccacatcgcgcagcagcgtgacaacgtggtgatcgaggcgcgccgggaa
gaagccgaagctgcggcagctctggccgccccgatggatgatgacatcattggcggcgac
gagttcgacactctggtcgaaaccccggagagccgcgaagactga
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