Raoultella ornithinolytica S12: TE10_03190
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Entry
TE10_03190 CDS
T03629
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ron
Raoultella ornithinolytica S12
Pathway
ron03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ron00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TE10_03190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ron03019
]
TE10_03190
03400 DNA repair and recombination proteins [BR:
ron03400
]
TE10_03190
Enzymes [BR:
ron01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TE10_03190
Messenger RNA biogenesis [BR:
ron03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TE10_03190
DNA repair and recombination proteins [BR:
ron03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TE10_03190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AJF71124
LinkDB
All DBs
Position
681775..683601
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AA seq
608 aa
AA seq
DB search
MAQAEVLNQTLLAKQVLQETFGYQQFRPGQETIIDTALQGRDCLVVMPTGGGKSLCYQVP
ALVLGGLTVVVSPLISLMKDQVDQLLANGVSAACLNSTQSREQQQEVMTGCRSGQIRLLY
IAPERLMLDNFLEHLSHWNLSMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMAL
TATADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKPLDQLMRYVQDQRGKSGI
IYCNSRSKVEDTAARLQSRGVSAAAYHAGLEHQVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGPL
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDALMDARKAL
STIYRVNQRFGMGYVVEVLRGANNQRIRDMAHDKLPVYGIGRDQSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGEVPLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQSPITAGEMLSVNGVGTRKLERFGKEFMALIR
AHVDGEEE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtggcacaggcggaagtattgaatcaaacattgctggcaaagcaggttttacaggaaacc
ttcggctaccagcagttccgcccgggtcaggaaaccattatcgacacggcgctgcaaggg
cgtgattgcctggtcgtgatgccaaccggcggcggcaaatcgctgtgctatcaggtgccg
gcgctggtgctgggcggcctgacggtggtggtatcgccgctgatctcgctaatgaaagat
caggtcgatcagctgctggcgaacggcgtgtcggcggcctgcctgaactcaacccagagc
cgcgagcagcagcaggaggtcatgaccggctgccgcagcggacagattcgcctgctctac
atcgcccctgaacgcctgatgctggataatttcctcgagcatctcagccactggaacttg
tcgatgctggcggtggatgaggcgcactgcatttcccagtgggggcatgatttccgtccg
gaatacgccgccctggggcagctgcgtcagcggatgccgcaaatcccgtttatggcgctg
accgccaccgccgatgacaccacccgtcgcgatatcgttcgcctgctggggctgaacgac
ccgctgattcaggtcagcagcttcgatcgccccaacatccgctatatgctgatggaaaaa
tttaagccgctggaccagctgatgcgctacgtgcaggaccagcgcggcaagtcgggcatt
atttactgcaacagccgctcgaaagtagaagataccgccgcgcgcctgcaaagccgcggc
gtcagcgcggcggcctaccacgccgggctggagcatcaggtccgtgccgatgtgcaggag
aagttccagcgcgatgacctacaaatcgtggtggcgacggtggccttcggaatgggcatc
aataagccgaacgtccgctttgtggtgcactttgatattccccgtaacattgagtcctac
tatcaggaaaccggccgcgccgggcgcgatggcctgccggcggaggcaatgctgttttac
gatccggccgatatggcgtggctgcgccgctgccttgaggagaagcccgccgggccgctg
ctggatattgaacgccataagctgaacgccatgggggcctttgccgaggcgcaaacctgc
cgccgcctggtgctgctgaactactttggcgaagggcgtcaggagccgtgcggcaactgc
gatatctgccttgacccgccgaagcagtacgacgcgttaatggatgcgcgcaaggcgctg
tcgacgatttatcgcgtcaaccagcggttcgggatgggctacgtggtggaggttctgcgc
ggcgccaataaccagcgtattcgcgatatggcccacgataagctgccggtttacggtatt
ggtcgcgatcagagccacgagcactgggtgagcgtgattcgccagctgatccacctcggg
ctggtgacgcagaatatcgcccagcactcggcgctgcagcttactgaagccgctcgcccg
gtgctgcgcggcgaagttccgctacagctggcggtgccgcgcatcgtggcgctgaagccg
aaagcgatgcaaaaatcattcggcggcaactacgaccgcaagctgtttgccaagctgcgt
aagctgcgtaaagccattgccgacgaagagaatatcccgccctatgtcgtctttaacgac
gctacgcttatcgaaatggccgagcaatcgccgattaccgccggcgagatgctcagcgtc
aacggcgtcggtacgcgcaagctggagcgcttcggtaaagagtttatggcgctgatccgc
gcgcatgttgatggtgaagaggagtag
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