Raoultella ornithinolytica S12: TE10_03815
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Entry
TE10_03815 CDS
T03629
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ron
Raoultella ornithinolytica S12
Pathway
ron03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ron00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TE10_03815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ron03400
]
TE10_03815
DNA repair and recombination proteins [BR:
ron03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TE10_03815
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TE10_03815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_23
AAA_25
NACHT
Viral_helicase1
T2SSE
cobW
ExoX-like_C
Motif
Other DBs
NCBI-ProteinID:
AJF71231
LinkDB
All DBs
Position
complement(819781..822606)
Genome browser
AA seq
941 aa
AA seq
DB search
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRC
PDHDVPLAAQTVSQMVDNVLSQPEGQRLMLLAPIIKERKGEHTKTLENLASQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVIDRFKVRDDLAQRLAESFETALDLSGGTAVVANMDDP
KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPERVIQNPEL
SLAGGAIRGWDRRNFYYFQMLKSLAEHYQFDIEAPWGTLNADVQKVILSGSGKENIEFKY
MNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRSCTSCDGTRLRREARH
VFVENTPLPTISDMSIGHAMDFFTNLKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLTL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLVHLRNLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGTLQDIMAVPESLTGQYMSGKRKIAV
PEQRVAADPQKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR
QLNGATIAEPAPYRDVQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPE
SRSRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY
KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECEASHTAHFLKPLLS
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggataagatcgaagttcggggcgcccgcacccataatctcaaaaacatcaacctcgtt
atcccccgcgacaagctgattgtcgtcaccgggctttcagggtcaggcaaatcctcactg
gctttcgacacgctgtatgccgaagggcagcgccgctacgttgaatcgctctccgcctac
gcgcgtcagttcctgtcgctgatggagaagccggatgtcgaccatatcgaggggctgtcg
ccggcgatttccatcgagcagaaatcaacgtcccataacccccgctctacggtaggcacc
attaccgaaattcacgactatctgcgtctgctgtacgcccgcgtcggcgaaccgcgctgc
ccggaccacgacgtcccgctggcggcgcaaaccgtcagccagatggtcgataacgtgctt
tcccagccggaaggccagcgcctgatgctgctggcgccgattatcaaagagcgtaaaggc
gagcataccaagaccctggagaacctggcgagccagggctatatccgcgcgaggatcgac
ggcgaagtttgcgatctctccgatccgccaaagcttgagctgcagaagaaacacaccatt
gaagtggttatcgatcgcttcaaggtgcgtgacgatctcgcccagcgtctggccgagtcg
tttgaaacggcgctggatctctccggcgggaccgccgttgttgccaatatggacgacccg
aaagcggaagagctgctgttctccgccaacttcgcctgtccgatttgcggctacagcatg
cgcgagctggaacctcggctgttctccttcaacaacccggccggcgcctgccccacctgc
gacggccttggcgtgcagcagtatttcgatcccgaacgcgtgatccaaaacccggagctg
tcgctggcgggcggggcgatccgcggctgggatcgacgtaacttctattatttccagatg
ctgaagtcgctggccgagcattaccagttcgatatcgaagcgccgtggggtaccctcaat
gccgacgtgcagaaagtcattctgtccggctccggcaaagagaacattgaattcaagtac
atgaacgatcgcggcgacacctccgtgcgccgccatccgttcgaaggcgttctgcacaat
atggaacgccgctacaaagagaccgaatccagcgcggtgcgcgaagagctggcgaagttt
atcagcaaccgctcctgtaccagctgtgatggcacccgtctgcgccgcgaagcgcgccac
gtcttcgtcgaaaatacgccgctgccgacgatctccgatatgagcattggccatgcgatg
gacttcttcaccaacctgaagctctccggccagcgggcgcaaatcgctgaaaaggtgctg
aaggagatcggcgatcgcctgaagttcctcgtcaacgtcggcctgaactacctgacgctc
tcgcgttcggcggagacgctgtccggcggcgaagcccagcgtattcgtctggccagccag
atcggcgccgggctggtcggcgtcatgtacgtgctcgacgagccgtcgatcggcctgcat
cagcgcgacaacgaacgcctgctcgggacgctggttcacctgcgtaatctgggtaatacg
gtcattgtcgttgagcatgatgaagacgcgattcgcgccgctgaccacgtgatcgatatc
ggtcccggcgctggcgtccacggcggacaggtggtggctgagggcacgctgcaggatatt
atggcggtgcctgaatccctgaccgggcagtacatgagcggcaagcgcaagattgcggtg
cctgagcagcgcgtagccgccgatccgcaaaaggtactgaagctgaccggcgcacgcggt
aacaacctgaaggacgttacgctgacgctgccggtgggcctgtttacctgcattaccggc
gtctccggctccggtaaatcaacgctgattaacgatacgctgttcccgatagcccagcgc
cagctcaacggcgcgactatcgccgaaccggcgccctatcgcgacgtgcaggggctggag
catttcgataaggttatcgatatcgaccagagccccattggccgtacgccgcgctctaac
ccggcaacctataccggcgtgtttacgccggtacgcgaactgttcgccggcgtgccggaa
tcacgttcacgcggctacacgccggggcgctttagctttaacgttcgcggtggccgctgc
gaagcctgccagggcgatggcgttatcaaggtcgagatgcacttcctgccggatatctac
gtgccgtgtgaccagtgcaagggcaagcgctataaccgcgaaacgctggagattaagtac
aagggtaagactatccatgaagtgctggatatgactatcgaagaggcgcgcgagttcttc
gacgccgtccctgcgctggcgcgtaagctgcaaaccctgatggacgtgggcctgacctat
atccgccttggccagtcggcgaccacgctctccggcggcgaggctcagcgcgtgaagctg
gcgcgcgagctgtcgaagcgcggaaccggccagacgctgtatattctcgatgagccgacc
accggtctgcactttgccgatatccagcagctgctggacgtcctgcatcagctgcgcgat
cagggcaacaccatcgtggtcattgagcacaacctggacgtcatcaaaaccgcggactgg
attgtggaccttgggccggaaggcggcagcggcggcggggaaattctcgtctccgggacc
ccagagacggttgccgagtgcgaagcctcgcacaccgcgcatttcctcaagccgttgctg
agctaa
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